Query= MSMg01no313_m18.b1 MSMg01no313_m18.b1 CHROMAT_FILE:
MSMg01no313_m18.b1 PHD_FILE: MSMg01no313_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:54 2005
(713 letters)
>mm_chr4_38670931_38672047
Length = 1117
Score = 1176 bits (608), Expect = 0.0
Identities = 658/680 (96%), Gaps = 14/680 (2%)
Strand = Plus / Minus
Query: 1 taactctgaaattttatttggatggacatgtaa----atattt---ataactcaccaaga 53
|||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 675 taactctgaaattttatttggatgga----taagtccctatttataataactcaccaaga 620
Query: 54 aatctatttcctgttgttatttgtaggaaccagtcattcatcttcttcaaggttgttctc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatctatttcctgttgttatttgtaggaaccagtcattcatcttcttcaaggttgttctc 560
Query: 114 agccacctaccctgtgaggctttcctcaaccttcttatatataccaaggttgtacacctc 173
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agccacccgccctgtgaggctttcctcaaccttcttatatataccaaggttgtacacctc 500
Query: 174 ttccttcttctttatcttctgttacacataatgattttccaatgagctatagtatttcca 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 ttccttcttctttatcttctgttacacataatgattttccaatgagctatagtatttcta 440
Query: 234 ttgcacatggtttgcctccttctattgaattgtgtctgtgtaataaagcatggttgtcct 293
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgcacacggtttgcctccttctattgaattgtgtctgtgtaataaagcatggttgtcct 380
Query: 294 tttttttcaattccttatgtctattagt-aaaaactcaaaaaacatgtacaaagaaaatg 352
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 379 tttttttcaattccttatgtctagtagtaaaaaactcaaaaaacatgtacaaagaaaatg 320
Query: 353 aacaagttggatatgcc-taaatggagaatttcataccatcatataattgtccagggcca 411
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaagttggatatgccttaaa-ggagaatttcataccatcatataattgtccagggcca 261
Query: 412 taaattcctttatgtaaatgtaagagttatatcatgcttcaaatgtatttttccagatcc 471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 taaattcctttatgtaaatgtaagagttatatcatgtttcaaatgtatttttccagatcc 201
Query: 472 tttataaattattttaatatatgtttatagattggctaataagtgattagcaaaaggcat 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 tttataaattattttaatatatgtttatagattcgctaataagtgattagcaaaaggcat 141
Query: 532 ggcataaagcttaagtttagattaagtcccatccagaatgatcagagacatacaagctgc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggcataaagcttaagtttagattaagtcccatccagaatgatcagagacatacaagctgc 81
Query: 592 ccattgcagtgttacattatcttcatgtgtgaaaactataaattttagaactagttccta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ccattgcagtgttacattatcttcatgtgtgaaaactataaattttagaactagttccta 21
Query: 652 ttcagtgaaatcccattctt 671
||||||||||||||||||||
Sbjct: 20 ttcagtgaaatcccattctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1117
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1107
Effective search space: 778221
Effective search space used: 778221
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_m18.g1 MSMg01no313_m18.g1 CHROMAT_FILE:
MSMg01no313_m18.g1 PHD_FILE: MSMg01no313_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:55 2005
(288 letters)
>mm_chr4_38513491_38514178
Length = 688
Score = 511 bits (264), Expect = e-149
Identities = 281/288 (97%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 1 acttctcaatataaagaacaatatatcacaaaagaggaaatcttatctacatttgaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctcaatataaagaacaatatatcacaaaagaggaaatcttatctacatttgaatgt 260
Query: 61 ataaatattgtagttgtgtatgaatataaaattacaactcctatcctccaacccataccg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaatattgtagttgtgtatgaatataaaattacaactcctatcctccaacccatacca 320
Query: 121 ggtttaaaggaaggaaaattaaaaatttcaggtgaactgcaaggaccttatgtagctcag 180
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttaaagggagaaaaattaaaaatttcaggtgaactgcaaggaccttatgtagctcag 380
Query: 181 cataacttaaacatattcctcacagaagtcttgtattgtgatgtgcacatgagcttttag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cataacttaaacatattcctcacagaagtcttgtattgtgttgtgcacatgagcttttag 440
Query: 241 tagataaacaaggtatacattttgtcgttcttgttgttatttaaaaca 288
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tagataaacaaggtatacattttgtcgttcttgtt---atttaaaaca 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
