BAC Information

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BAC

Clone NameMSMg01-315D15
Chromosome4 (Build37)
Map Location 62,639,114 - 62,639,453
singlet/doubletsinglet
Overlap geneZfp618
Upstream geneLOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneAmbp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315D15.T7 (MSMg01no315_d15.b1)MSMg01-315D15.TJ (MSMg01no315_d15.g1)
ACCAG435928AG435929
length725732
length of high quality
(start - end)
372 (39 - 410)567 (76 - 642)
definitionCHROMAT_FILE: MSMg01no315_d15.b1 PHD_FILE: MSMg01no315_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:38 2005CHROMAT_FILE: MSMg01no315_d15.g1 PHD_FILE: MSMg01no315_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
GTCCTTCCCGGCCTGAATCCCTGACACTTAAGCTACCTGTGCAACAGTGG
GTACCTCGCTTTAGCTCCAATCTCAACTTGTTCACATTAAAAATATAAGT
AAAGGTTCTGGGGCCAGGGATGGCTGATGGATATAAGTATATTTTGCTGT
ATAAACATGAAGATCTGAGTTCAGACCCTAACACCCAGGGAAAGGGCAGG
CACAGGGGCATGAATCTGAAACCCTAATACTGGGGGAGGTGACAGCCAGA
TCCCAGGGTCTCCGTATATACCCACATAGACACCCACACATACATACATA
TATACCTATGTGTGTGGTCCTGGGAAGCCACATGAGTGACTGTACTAAAG
GAGATGCCACACCCCCACTGCTTAGCCCAGTGCCTGGCATCTAATACACA
CTCAGCTAATATGCAGTGGCAGAAATACTTTAATGCTGAAAAAAAATCCA
TTTGCAAAACTAAAGTAAGATAAATACGCATGTTGCCCTGTGACCTTTGA
CAGAGATCCCGATTAAAAACAAAGACCCCGCTGAATTTCCAACACTCAAA
CTTCCAGAACCTCCATAGCGAGAGTCCGGGGCCTAGAGTTAAACAGGTAC
TGCTGGCTCTGTCTCCCTCTGGGACTCACGGTCAGGCGGGAGGCTGGCAG
CTAGAGGGCCTCCCACCTGCCTGAA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGAGATAGCCTCTCTGGC
TATCTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGAT
GTATGCTTGTTATAGTGTGTGTGTGTTGTGTGTTTGGCACATGTGTTAGG
TGCAGAGTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTG
CAGTGGAGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAA
ATTATGCTGCATTATGCCGTGGGTTGCTAGGCTAAGCACTGCACAGAGGA
TAGCTTGCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTT
CAGTGTCCTAGTTCCCTTCCCCCCCCCCAAACGACACGGGAGCTGGCCAA
GACCTCTCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTAT
GCTTGCACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTG
CAGCAATTAAGATCTGGCCATAAGTTAATTAACATCCTGGCCTTTTGATA
CACCTGCCGCAAGCAAAACACAATCTCCCCAGGAGTGGCTTGGTATGATA
GAGAGGTAGTCAGTGATAAGACTCCCTGGGCATGTCTCCAACCTAAGACA
GGGATCAAACCAATGCTGTTTGTCACCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_d15.b1 MSMg01no315_d15.b1 CHROMAT_FILE:
MSMg01no315_d15.b1 PHD_FILE: MSMg01no315_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:38 2005
         (372 letters)



>mm_chr4_62639114_62639885
          Length = 772

 Score =  607 bits (314), Expect = e-178
 Identities = 334/342 (97%), Gaps = 4/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcagagtccttccc--ggcctgaatccctgacacttaagctacctgtgcaacagt 60
           ||||||||| ||||   ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggaattcagtgtcc--accaaggcctgaatccctgacacttaagctacctgtgcaacagt 283

                                                                       
Query: 61  gggtacctcgctttagctccaatctcaacttgttcacattaaaaatataagtaaaggttc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 282 gggtacctcgctttagctccaacctcaacttgttcacattaaaaatataagtaaaggttc 223

                                                                       
Query: 121 tggggccagggatggctgatggatataagtatattttgctgtataaacatgaagatctga 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 222 tggggccagggatggctgatggatataagtatattttgctgtatgaacatgaagatctga 163

                                                                       
Query: 181 gttcagaccctaacacccagggaaagggcaggcacaggggcatgaatctgaaaccctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gttcagaccctaacacccagggaaagggcaggcacaggggcatgaatctgaaaccctaat 103

                                                                       
Query: 241 actgggggaggtgacagccagatcccagggtctccgtatatacccacatagacacccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 actgggggaggtgacagccagatcccagggtctccgtatatacccacatagacacccaca 43

                                                     
Query: 301 catacatacatatatacctatgtgtgtggtcctgggaagcca 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  catacatacatatatacctatgtgtgtggtcctgggaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)