Query= MSMg01no315_d16.b1 MSMg01no315_d16.b1 CHROMAT_FILE:
MSMg01no315_d16.b1 PHD_FILE: MSMg01no315_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:38 2005
(690 letters)
>mm_chr4_69253336_69254426
Length = 1091
Score = 1218 bits (630), Expect = 0.0
Identities = 673/694 (96%), Gaps = 13/694 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctttcctcccgtggtgtcatgtaggggcataaaaacttacagatttcagtgt 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttccacttgtggtgtcatgtaggggcataaaaacttacagatttcagtgt 263
Query: 64 tagaagttcatatttctgaggtaaggatgcttagccttgtataaataatgtgaaaagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagaagttcatatttctgaggtaaggatgcttagccttgtataaataatgtgaaaagttt 323
Query: 124 gtatcccatgaggccttatagaatctcactccactggtctctccaatgtgagctcccaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatcccatgaggccttatagaatctcactccactggtctctccaatgtgagctcccaac 383
Query: 184 atacatgcactcattcctgctgttctactattcagttgccttttcatccatctggaccac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atacatgcactcattcctgctgttctactattcagttgccttttcatccatctggaccac 443
Query: 244 agaaagatatcagca-cccatatcataattttatccttcacggtaacttgcaaagttctt 302
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 agaaagatatcagcaccccatatcataattctatccttcacggtaacttgcaaagttctt 503
Query: 303 aataaatgctattctagaacagtttgcatcccacaggggaactacatcaaagagcatggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataaatgctattctagaacagtttgcatcccacaggggaactacatcaaagagcatggt 563
Query: 363 gctaagtagg------cccccccatgaaatgaaaacattaaataattctggacaatggta 416
|||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 gctaagtaggtatggt------catgaaatgaaaacattaaataattttggacaatggta 617
Query: 417 tatattacttgatcccttaaacaatttatatactgaaatatcaaccccatggtggcttta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tatattacttgatcccttaaacaatttatatactgaaatatcaaccccatggtggcttta 677
Query: 477 gatactgtacatctggaatgataccatgcatgtggagtcttcatgaaagggaacagacaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gatactgtacatctggaatgataccatgcatgtggagtcttcatgaaagggaacagacaa 737
Query: 537 ccccagaggaaagatcttccccttagctgtgacaagatacaagaagactcatctataagt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccccagaggaaagatcttccccttagctgtgacaagatacaagaagactcatctataagt 797
Query: 597 atgaaggtagatgttttgctaatagcaattgagggcacattgaagacatggacttcctag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atgaaggtagatgttttgctaatagcaattgagggcacattgaagacatggacttcctag 857
Query: 657 tgaacagagttatgagtagtgtgtgctgttcaag 690
|||||| | ||||||||| |||||||||||||||
Sbjct: 858 tgaacaaaattatgagtaatgtgtgctgttcaag 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space: 735080
Effective search space used: 735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_d16.g1 MSMg01no315_d16.g1 CHROMAT_FILE:
MSMg01no315_d16.g1 PHD_FILE: MSMg01no315_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:38 2005
(290 letters)
>mm_chr4_69406620_69407308
Length = 689
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 atgggggtgcatagagagcagggagtagggtgtaatgtgaagtaagaccacctaaggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgggggtgcatagagagcagggagtagggtgtaatgtgaagtaagaccacctaaggttt 430
Query: 61 taaaagccctgactgagatcctcctatagctagaactgacaatgtggagagtgactggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 taaaagccctgactgagatcctcctatagctagaactgacaatgtggagagtgactggtc 370
Query: 121 tctggttgagacatctgagggtagaacaaaactagaagccactctgcatctctaacagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctggttgagacatctgagggtagaacaaaactagaagccactctgcatctctaacagct 310
Query: 181 atccaatctcagtttcataagtcactctgattacattaactcatttctgtatttgttctg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atccaatctcagtttcagaagtcactctgattacattaactcatttctgtatttgttctg 250
Query: 241 agctattcataaaacatcagaccaaaataaaagggaaaaaaatcagagaa 290
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 agctattcataaaacatcagaccaaaataaaaggg-aaaaaatcagagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
