BAC Information

Click to search

BAC

Clone NameMSMg01-315F06
Chromosome4 (Build37)
Map Location 27,470,758 - 27,471,005
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F06.T7 (MSMg01no315_f06.b1)MSMg01-315F06.TJ (MSMg01no315_f06.g1)
ACCAG436004AG436005
length725736
length of high quality
(start - end)
374 (41 - 414)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no315_f06.b1 PHD_FILE: MSMg01no315_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:45 2005CHROMAT_FILE: MSMg01no315_f06.g1 PHD_FILE: MSMg01no315_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT
CCTAAACCTGACAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACT
CAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATA
TCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACT
TCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCATGATCAACATTGTAAAAATGCCTATCTT
GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCGAACTC
AATTCTTCAACGAATCACACCGAGCAATTTGCAAATTCATCTGGAATAAC
AAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGG
TGGAATCACCATACCTGATCTAGAGCTTTACTACGGAGCAATTGTGATAA
AAACTGCATGGTACTGGTATAGAGACAGACCAGTAGACCAATGGAATAGA
ATTGAAGACCCAGAAACGAACCCCGACACCTATGGTCACTTGATCTTCGA
CAAGGGAGCGAAAACCATCCAGTGGAAGACAGACAGCCTTTTCAACAATT
GGCGCTGGCACAACTGGTTGTTATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAATCAGGGATGGCTGACAAC
AGGACAGTTGCACAGATGAAATCACCATATTGTGTCATCACACACATCAA
CTATGTAAGCTCAATACAAATAATGTCCCAGCACTGAAAATAGAAATGGG
AAGGAAGTCCTACCTGATGAGCTAATGAGAGTTAAGGACTTCTGGCAGAG
GTACTATCAATTCCATTTAAGGATAAAGACATTGGGTGATTACTGATTTT
CCAACAGATAACCACACATATGTGTTCCCTCAGATGGCAATGGTTACGCT
ACTTGAAGCACTTAACACCAAAACTGCGGTGACGATTGTAATCCCAAATA
ATGTCAAAGGCCTTGAACCTCCCCCACTGCCCAGCCAGAGTCTGCTTTGG
CACAGTCATGATCTTCAGAATCCAATCTTTAAAGTCAATGTCGCTTAATG
GACTGAGAGTTCAGGTAGATCTCCTCCAAGGACTTGATTTTTATATCCTC
GACCAGTTGGCCCAGGTTGGTGATAGAGACGCACTCCTTGTTTTCAGTTT
CACCTCCATGATCTCTGAGGCCTCAGTGACAGTTATGGTATCAACCCTGA
CCTTGACCCCTAAATTTTGTTGCTGAAATCCTTCTTGGCAACCTCCTTGA
ATCCTCCGAAATCCTGACGTCCCCTGGTCTCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f06.g1 MSMg01no315_f06.g1 CHROMAT_FILE:
MSMg01no315_f06.g1 PHD_FILE: MSMg01no315_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:45 2005
         (249 letters)



>mm_chr4_27470558_27471206
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaatcagggatggctgacaacaggacagttgcacagatgaaatcaccatattgtgtc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||
Sbjct: 448 catgaatcagggatggctgacaacaggacagttgcacagatgaattcattatagtgtgtc 389

                                                                       
Query: 61  atcacacacatcaactatgtaagctcaatacaaataatgtcccagcactgaaaatagaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcccacacatcaactatgtaagctcaatacaaataatgtcccagcactgaaaatagaaa 329

                                                                       
Query: 121 tgggaaggaagtcctacctgatgagctaatgagagttaaggacttctggcagaggtacta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 328 tgggaaggaagtcctacctgatgagctaatgagagttaaggactgctggcagaggtacta 269

                                                                       
Query: 181 tcaattccatttaaggataaagacattgggtgattactgattttccaacagataaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcaattccatttaaggataaagacattgggtgattactgattttccaacagataaccaca 209

                   
Query: 241 catatgtg 248
           ||||||||
Sbjct: 208 catatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)