BAC Information

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BAC

Clone NameMSMg01-315G16
Chromosome4 (Build37)
Map Location 30,942,327 - 30,942,634
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906, LOC100040864
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315G16.T7 (MSMg01no315_g16.b1)MSMg01-315G16.TJ (MSMg01no315_g16.g1)
ACCAG436069AG436070
length727730
length of high quality
(start - end)
599 (129 - 727)306 (425 - 730)
definitionCHROMAT_FILE: MSMg01no315_g16.b1 PHD_FILE: MSMg01no315_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:52 2005CHROMAT_FILE: MSMg01no315_g16.g1 PHD_FILE: MSMg01no315_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTACAATACCGAATGGCTGAGAAGCACCTGAAAA
AATGCTCAGCATCCTTAATCTTCACCCAAATGCAAATCAAAACAACCCTG
AGATTCTACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGA
CAGTAGATGCTGGCAATGATGTGTCGATAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTATGGGAGGATCCTGCAATACCTCTCCT
GGGCATATATCCAGAAGTTGTTCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCCATTAGCACCCCAACAACAAGTCAAGTCTTGGCTCCG
TTTCCTATTCTGGTTATGTATTTGATGTGACATTAGGACAAAATACCTGA
TAAAAACAATTTGAAGAAGACAAAGCTTATTTTGGCTCTCATTTTGAGGT
ATGTTCTGTCTTCTGGGGAAGTTGTAGCATCAGAAGCTTGAAGCAGCTAG
CTGATTTTGCCAGGAAGAAGAGAGAGCGGAATACTTCTGCTGAGTCACCT
TCTCTTTTTGGTTCAGTCCAGGAAACAATCCACAGAATGGCGTCATCCAC
ATTTAGATTGGATTTTTGCACCTCATT
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTACTGCACTGGCAAAATTTC
ATGTAAGATATGTCCACTTGTACAATGCTTACATGTCTGTTATGGTAGTA
ACCAACCTCTTTCTGATTGGAATTAAGGCTTGCTACATAGATGGGAATTT
ACATGTACTATTATAAAATTGGATGAGGAGAGATGACCTTGTCCTCAGTT
GAGAAGCTACAGCTTTTTATCATTGTTGTTGTTATTGAATGGACATGATA
AACCTGTCAATTTTTCTTTTTCTATTTCTTTACATTTTTCCTAGATATTT
TTCAAACTTATTTATGATCATATGTTTAAATTTCATGTCTCTTTTCACCT
ATTCATATGTTGACACACACCACTAATCTGTTTTTGCCTTTATTGTCTCA
TTTTTGTGTTAAATTATTTTATTGTATGCTTGAGGAAATTTACTGACCCT
CAATTAACTTTAGAATGTCGGCCTTTAGGGATTCAATTTTCGCTATCAGG
TTACTACATTCTTTTTTAAAAAATTTCTCTTTTTTGCTTTTTTTTTGCTT
TTTTTATTGGATATTTTCTTCATTTACATTTCAAATGCTATTCCAAAAGT
CCCCTATTAACCCACACACACCGCCCTGCACCCCTACCCACTCACTCCCA
CTTCTTGGCCATGACTTTAGCCTGTACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_g16.g1 MSMg01no315_g16.g1 CHROMAT_FILE:
MSMg01no315_g16.g1 PHD_FILE: MSMg01no315_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:52 2005
         (306 letters)



>mm_chr4_30942127_30942832
          Length = 706

 Score =  551 bits (285), Expect = e-161
 Identities = 302/309 (97%), Gaps = 4/309 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgtttttgcctttattgtctcatttttgtgttaaattattttattgtatgcttgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aatctgtttttgcctttattgtctcatttttgtgttaaattattttattgtaggcttgag 260

                                                                       
Query: 61  gaaatttactgaccctcaattaactttagaatgtcggcctttagggattcaattttcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatttactgaccctcaattaactttagaatgtcggcctttagggattcaattttcgct 320

                                                                       
Query: 121 atcaggttactacattcttttttaaaaaatttctcttttttgcttttttttt---gcttt 177
           |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||
Sbjct: 321 atcaggttactacattctttttaaaaaaatttctcttttttgcttttttttttttgcttt 380

                                                                       
Query: 178 ttttattggatattttcttcatttacatttcaaatgctattccaaaagtcccctattaac 237
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttt-attggatattttcttcatttacatttcaaatgctattccaaaagtcccctattaac 439

                                                                       
Query: 238 ccacacacaccgccctgcacccctacccactcactcccacttcttggccatgactttagc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ccacacacaccgccctgcacccctacccactcactcccacttcttggccctgactttagc 499

                    
Query: 298 ctgtactgg 306
           |||||||||
Sbjct: 500 ctgtactgg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)