BAC Information

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BAC

Clone NameMSMg01-315K03
Chromosome4 (Build37)
Map Location 45,469,936 - 45,470,469
singlet/doubletsinglet
Overlap geneShb
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1
Downstream geneLOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315K03.T7 (MSMg01no315_k03.b1)MSMg01-315K03.TJ (MSMg01no315_k03.g1)
ACCAG436221AG436222
length719752
length of high quality
(start - end)
547 (50 - 596)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no315_k03.b1 PHD_FILE: MSMg01no315_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:10 2005CHROMAT_FILE: MSMg01no315_k03.g1 PHD_FILE: MSMg01no315_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTACAAGCTCGCCTTCTGATCTCCACACATATGCCTTGGTG
CTTGCGCGCACGCGCGTGTGCACACACACGCACACACACGCACACTCACT
CACTCACTCACTTAGAGCATGTTCTGCCAGGTCCTACATGATTTGTGTTG
ATGTTTAAGTGAGAAGCACTTCAGCAGTAGGACGTGATCTCTCAGAAGGC
TGTCTGTCTGGAACCTGCCCACTCATGCCTGGAGACAGGTCTACTACTGT
CCCTGTAGTTGGCCTCAGGTAGCGCTAGTTGGCAGTAATTCTCAGGACCC
ACAACTGCCCAGGCTGCTCCTGCTTCTTGTCACTGTTCTCTTATTGTTGG
TGTCACTCAGACTCTTACCCCCCCNGCCTCCCATGTCTCTTGGCTTTACA
TGTCTTACTCTAGAGCAGGCCTGTGCCTGTCCCAAGCAGCTTCGGGTGCC
TTCTCATTTTCTGGGATGAAGGCGGATGCTGTGAGCACCAGCTTTCAGTC
TGTTTCTTCTGCCCAGGCAGCACTGGATGGAGGCCAGTGGGCCACCACTC
AGGATGATGGTGCTTAGCAGCACCTTGATTGGATGGTCGAGTGTCATCAT
GGTTCCAGTTGCTAGCCCCGAAGCGCGGCTGCGCGTAACGAAAGGCACAG
TTCCCTACTGAGTGGCTGG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCGTGGAAAATATCAACCCA
GCTTTCAAGCTGTTTGAGCAGTAGCCATGGAAAATTGTAGAGCCCCTCAA
AATCCTCCGATTCTCTTTTTCCTTCTCAACCAGACTTCCAAAGGGACATT
ATAAGCACTCATTCCCCAACAGGGCCTGCCATGTAGGAGGCACTCAGGCA
TGCTTATTGGCCAAAGAAATAGTCACGCACAGAGAAGACGACAAATGTTG
TGAAATTTGGTTGTTAAAAAATGCCTTTATTTGCCAGGCAGTGGTGGCGC
ACGCCTTTGATCCCAGCACTTGGGAGGCAGAGACAGGCGGATTTCTAAAA
GTTTGAAGACAGCCCCCCCCACAAATCAAGTTCCAGGACGGCCAAAGGCT
GTTACAGAGAAACCTGGTCTTGAAAAAACAAAAACCTAACAAGCAAACAA
AACAAAAAAACCTTTTCTTTCCCACTTTTATTTGATGGGTGCAGGGAAAA
AAACGGTGGTACCTTATTGAATTATTAGGGAAAAGGCCCGAAATTTTTAC
CCCTTTAACTTGTGTCTAAATTGGGGGAGGGGGTATTTACAAAATATTCC
CGTCTGGGATCTCGAAATTTGGGATATTGGGGGGGGATTACCTGGAATAA
CCCTCTGGTGGACCATTGGGGGGGGTTCTCACAGACGGGGGGCAAAAAAA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_k03.b1 MSMg01no315_k03.b1 CHROMAT_FILE:
MSMg01no315_k03.b1 PHD_FILE: MSMg01no315_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
         (547 letters)



>mm_chr4_45469624_45470570
          Length = 947

 Score =  901 bits (466), Expect = 0.0
 Identities = 520/543 (95%), Gaps = 9/543 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacaagctcgccttctgatctccacacatatgccttggtgcttgcgcgcacgc 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 846 gaattcttacaagct-gtcttctgatctccacacatatgccttggtgcttgcgtgcacgc 788

                                                                       
Query: 65  gcgtgtgcacacacacgcacacacacgcacactcactcactcactcacttagagcatgtt 124
           |||||||         |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 787 gcgtgtg--------tgcacacacacacacactcactcactcactcacttagagcatgtt 736

                                                                       
Query: 125 ctgccaggtcctacatgatttgtgttgatgtttaagtgagaagcacttcagcagtaggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctgccaggtcctacatgatttgtgttgatgtttaagtgagaagcacttcagcagtaggac 676

                                                                       
Query: 185 gtgatctctcagaaggctgtctgtctggaacctgcccactcatgcctggagacaggtcta 244
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 675 atgatctctcagaaggctgtctgtctggaacctacccactcatgcctggagacaggtcta 616

                                                                       
Query: 245 ctactgtccctgtagttggcctcaggtagcgctagttggcagtaattctcaggacccaca 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 615 ctactgtccctgtagttggcctcaggtagcactagttggcagtaattctcaggacccaca 556

                                                                       
Query: 305 actgcccaggctgctcctgcttcttgtcactgttctcttattgttggtgtcactcagact 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 555 actgcccaggctgctcctgcttcttgtcactgttctgttattgttggtgtcactcagact 496

                                                                       
Query: 365 cttacccccccngcctcccatgtctcttggctttacatgtcttactctagagcaggcctg 424
           |||||||  || | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttaccctgcctgtctcccaagtctcttggctttacatgtcttactctagagcaggcctg 436

                                                                       
Query: 425 tgcctgtcccaagcagcttcgggtgccttctcattttctgggatgaaggcggatgctgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgcctgtcccaagcagcttcgggtgccttctcattttctgggatgaaggcggatgctgtg 376

                                                                       
Query: 485 agcaccagctttcagtctgtttcttctgcccaggcagcactggatggaggccagtgggcc 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 375 agcaccagctttcagtctgtttcctctgcccaggcagcactggatggaggccagtgggcc 316

              
Query: 545 acc 547
           |||
Sbjct: 315 acc 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)