Query= MSMg01no316_b09.b1 MSMg01no316_b09.b1 CHROMAT_FILE:
MSMg01no316_b09.b1 PHD_FILE: MSMg01no316_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:45 2005
(501 letters)
>mm_chr4_62967315_62968215
Length = 901
Score = 946 bits (489), Expect = 0.0
Identities = 498/501 (99%)
Strand = Plus / Minus
Query: 1 ttccccctgagtgctggcttatgaacccctggtgatggtcagaacttttcatctttaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttccccctgagtgctggcttatgaacccctggtgatggtcagaacttttcatctttaagg 642
Query: 61 gcgttatgaaagagaggatatgaaagccccaggtagagcaagggcagccttgaaaccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcgttatgaaagagaggatatgaaagccccaggtagagcaagggcagccttgaaaccctg 582
Query: 121 ctgattcctccacccccaccccacctcccttcctctgccggggagaagctgctaattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgattcctccacccccaccccacctcccttcctctgccggggagaagctgctaattcag 522
Query: 181 tgttctgagggaactagagtagggctagaggccattcccagatcctggcccagacaactc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgttctgagggaactagagcagggctagaggccattcccagatcctggcccagacaactc 462
Query: 241 accttcagcccatctggccccacagggccatggtctccctcaaggcctggctctccctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 accttcagcccatctggccccacagggccatggtctccctcaaggcctggctctccctgg 402
Query: 301 gagaaaaagatggggaggtattactgggtagcagcgcaaggggcgttccctccccacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagaaaaagatggggaggtattactgggtagcagcgcaaggggcgttccctccccacttg 342
Query: 361 ccagggtcaggaacccactggctctcagaagctgaacaagtggatttctatggggcggaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 341 ccagggtcaggaacccactggctctcagaagctgaacaagtggatttctatggggcagaa 282
Query: 421 gaagggccacagagccttatggaccaggtacctgccgttggactggggaagccagttggt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 281 gaagggccacagagccttatggaccaggtacctgctgttggactggggaagccagttggt 222
Query: 481 aagaatggtttctgacaatgc 501
|||||||||||||||||||||
Sbjct: 221 aagaatggtttctgacaatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_b09.g1 MSMg01no316_b09.g1 CHROMAT_FILE:
MSMg01no316_b09.g1 PHD_FILE: MSMg01no316_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:45 2005
(648 letters)
>mm_chr4_62772953_62774001
Length = 1049
Score = 1075 bits (556), Expect = 0.0
Identities = 584/594 (98%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 57 tgtcattctgtcctgccctgtccagcctcatcacaaatcctgccctggatcactgtcctt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtcattctgtcctgccctgtccagcctcatcacaaatcctgccctggatcactgtcctt 316
Query: 117 tctgtttaggttcagtgagtgggtatgcccactgggccctactctgtcctgtgagctgat 176
|| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 tcggtttaggttcagtgagagggtgtgcccactgggccctactctgtcctgtgagctgat 376
Query: 177 tatctctaatagagtttggggaatgagctgagacgccccaggtctgctctgtggatcaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatctctaatagagtttggggaatgagctgagacgccccaggtctgctctgtggatcaca 436
Query: 237 tcaccaattgatgagggctgtaagctttgatttaattgtcttagcttcatcaggaacccc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcaccaattgatgagggctgtaagctttgatttaattgtcttagcttcatcaggaacccc 496
Query: 297 agtcctgtcccagccactccatcatggccagaagtcttctttccaggccatgacgtttca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtcctgtcccagccactccatcatggccagaagtcttctttccaggccatgacgtttca 556
Query: 357 cccgttcctaccttctgcctttagtgcgcaggattccttgacttcacctctgctctgtag 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 557 cccgttcctaccttctgcctttagtgcgcaggattcct-gacttcacctctgctctgtag 615
Query: 417 agtatagagacaacccatgcctctccactctcttaatttttat--gtatttttttctacc 474
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 616 agtatagagacaacccatgcctctccactctcttaatttttatctgtatttttttctacc 675
Query: 475 tgtgttaattttcaacttcctataggagagactttgcaccctgtcattgtttaggcgtgt 534
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 676 tgtgttaattttcaacttcctataggagagactttgcaccctgccattgtttaggcatgt 735
Query: 535 tatgaataaaaatctcacgggtatttctttcaatgggatgtagccaatctttgagagatg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tatgaataaaaatctcacgggtatttctttcaatgggatgtagccaatctttgagagatg 795
Query: 595 ctcattcctagtgcaagtccagttatcagctccagcctgatggtgctcatatga 648
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 796 ctcatttctagtgcaagtccaggtatcagctccagcctgatggtgctcatatga 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
