Query= MSMg01no317_a16.b1 MSMg01no317_a16.b1 CHROMAT_FILE:
MSMg01no317_a16.b1 PHD_FILE: MSMg01no317_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:58 2005
(539 letters)
>mm_chr4_15243956_15244894
Length = 939
Score = 839 bits (434), Expect = 0.0
Identities = 510/548 (93%), Gaps = 23/548 (4%)
Strand = Plus / Minus
Query: 5 gaattcttttgatctcttaaaatttttattttgtgtgtgtatgcctgagagagagagaga 64
|||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 828 gaattcttttgaacttttaaaatttttattctgtgtgtgtatgcct----gagagagaga 773
Query: 65 gagagagagagagagagagagagagagagagagagagaatgcttgtgtgcacactgatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gagagagagagagagagagagagagagagagagagagaatgcttgtgtgcacactgatgt 713
Query: 125 gcttgtttgtatgcatgtgtagaggccagaagagggcatcagatgtccttctaaatcact 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcttgtttgtatgcatgtgtggaggccagaagagggcatcagatgtccttctaaatcact 653
Query: 185 ctttgcctctcttcttgagaccaggtctttccctgaacccgaagctcatgctttctaggc 244
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 652 ctttgcctctcttcttgagaccaggtctttccctgaacctgaagctcatgttttctaggc 593
Query: 245 tgggctcctgtgtctgccccactcagatctggagttacaggtattcatggccaagggttg 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 592 tgggctcctgtgtctgccccactcagatctgaagttacaggtattcatggccaagggttg 533
Query: 305 atcctcatgcttgtccagcaagtgacttaacagcaaaaccagccttccagaactgggtat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atcctcatgcttgtccagcaagtgacttaacagcaaaaccagccttccagaactgggtat 473
Query: 365 ttttcacgcacatacagctttattttgtgtgtgattc--------------gtgtgtgtg 410
|||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct: 472 ttttcaggtagatacagctttattttgtgtgtgattcgtgtgtgtgtgtgtgtgtgtgtg 413
Query: 411 tgtgtgtgtgtgtgtgtgattcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg- 469
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 412 tgtgtgtgtgtgtgtgtgatt--cgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtga 355
Query: 470 --cgtgtgtgtgtgtgtgtatgtgtgtgtgcgtgattcgtatgtgtgtgtgtgtgtgtgt 527
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 354 ttcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgattcgtgtgtgtgtgtgtgtatgtgt 295
Query: 528 atgtgtgt 535
|||||||
Sbjct: 294 gtgtgtgt 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 295
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_a16.g1 MSMg01no317_a16.g1 CHROMAT_FILE:
MSMg01no317_a16.g1 PHD_FILE: MSMg01no317_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:58 2005
(649 letters)
>mm_chr4_15071083_15072126
Length = 1044
Score = 1102 bits (570), Expect = 0.0
Identities = 627/652 (96%), Gaps = 13/652 (1%)
Strand = Plus / Plus
Query: 1 ttctactgtgtcctcacaagtgagaaatgagtagagcagaagcaaccacacatctagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctactgtgtcctcacaagtgagaaatgagtagagcagaagcaaccacacatctagagt 260
Query: 61 ggacccagaatttccatcatcatcccatgtaaacaacaaccaggggcagcactcaggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacccagaatttccatcatcatcccatgtaaacaacaaccaggggcagcactcaggctc 320
Query: 121 tcagagatgaaattaagacagtagctcatgttattagactcctgtaattaaatatggata 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tcagagatgaaattaagacagtagctcatgttattagtctcctgtaattaaatatggata 380
Query: 181 gaattgccactcctgcaaattttgcctccgagctcacaatttaaaaaaaaaaaaaaagaa 240
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 381 gaattgccactcctgcaaattttgcctccaagctcacaatttaaaaaaaaaa-----gaa 435
Query: 241 gcactgcttattt----atttggagctcagtatgtagtgttactacagcctgctaatctt 296
||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcactgcagat--gagaat--ggagctcagtatgtagtgttactacagcctgctaatctt 491
Query: 297 aacagctgcccgcactaggcatagtaaatacatttaaatatgtccagggaggaagcttaa 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacagctgcctgcactaggcatagtaaatacatttaaatatgtccagggaggaagcttaa 551
Query: 357 atatgaagaacactgtacttcactataatttacagattacggacagcttccttattacct 416
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||
Sbjct: 552 atatgaagaacactgtacttcactataatttacggattacggacggcttctttattatct 611
Query: 417 ccaaagatattctttcatacccataaatgaaattccttgtttctcactaagttattgagg 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ccaaagatatactttcatacccataaatgaaattccttgtttctcactaagttattgagg 671
Query: 477 gcagactttaaatgtaaatgttatcttgaaaacataaaaatgtcacaattcactggacta 536
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 672 gcagactttaaatgtaaatgttatcttgaaagcataaaaatgtcacaattcactggacta 731
Query: 537 acaagtaccccagaacaggactcagggtaagatgggttgtcagtcccttgacaggatcct 596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 acaaggaccccagaacaggactcagggtaagatgggttgtcagtcccttgacaggatcct 791
Query: 597 gggcaactgggatgcacagcagaaccttggagttcatagagagcatgaactt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gggcaactgggatgcacagcagaaccttggagttcatagagagcatgaactt 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1044
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1034
Effective search space: 660726
Effective search space used: 660726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
