BAC Information

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BAC

Clone NameMSMg01-317D18
Chromosome4 (Build37)
Map Location 92,997,331 - 92,997,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125
Downstream geneTusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317D18.T7 (MSMg01no317_d18.b1)MSMg01-317D18.TJ (MSMg01no317_d18.g1)
ACCAG437363AG437364
length1,053746
length of high quality
(start - end)
---313 (434 - 746)
definitionCHROMAT_FILE: MSMg01no317_d18.b1 PHD_FILE: MSMg01no317_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:13 2005CHROMAT_FILE: MSMg01no317_d18.g1 PHD_FILE: MSMg01no317_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAAAAAAATAGGAACAANAACAAGAACAAAATTATAAATAATACGCGCT
CAACTCAGGTTTTTTAAGGTTAATGTGTTGTAATTTTAATATTTTTATTT
AAAGAATTTATAAGATAAAAAAATTTATAATGATTTAAGATAAGTAAAAA
AAGAAAAAAAATAAATAGTAGTAGTGTTTTTGATTAGTGAAAAGATAATA
GTTGTATAGAATAGTGAAAAAATAATATATTAATAGGAAAAATATTTTGT
AAATTGGTATTGTTATTTATGTATTGTAGAATAAATAATAAATTATAATA
GAATAGAATGAGGGCGATATATTTTGATACATGTTAGAGTGTGTGATATT
GTGTGCGGTTATTATTTATTATTATTGAAAAAGAAATTTTTATTATAATA
TAGAATTGAAAGAAGAGAAAAGATGATAGTGGTTGATTTTGTGATTATAA
TGATTTGGTTTGGGAAGGTTGTATTATTTTATAAAAAATAATTTTATTAA
ATTTTAATTATAGTAAGTTGTGGTTGAGTATTTATGAGATTGTCAACACA
AACAACAAAAAAAATTTTTTAAAGGAGTTTTATAGTGAGAGTGATTGGGT
AATGGAATATATATATGTAAATGAAGATTGTGAAGAATGTGTTATAAATT
TTGTAGGAAGTATTTGTTAGGAAAATGTATATATTATATATAATTTAAGG
TGTGTAAAATATTATAGAATTTGGAAGGAATAATAAAGTATATTGTATTA
TTCAATTTTTGATATATGGAGTTGTAATAAAGAATATTAAATATAAGAGT
AGTGGAGATGACGGATTAATATTATTAATAGTAGAGAGAATTGATTTATA
GATATAAATATATATATCGTTATAAAGTTATATTTAGATTGAAAGTTTTT
GAGATATGATTATAAGTGTTTATAATTTGAGTGGTAGTAGGGTTATGTAA
GTTGTGGATAATATTATTGTGTTATATATGGAATTTATTTCGATTTAGTG
ATTAANTAATGTGTTTGTCATATGTAAATAATTATATTTTTTTAGAATAC
TGA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGACTGCACAGA
GAAACCCTGCCTTGAAAAACCAAACAATTTAAAAAAAAATTAAAAGATTT
TTGAAAGATTATATTTTGTTATTTTTTCAGTTATCAAATAGGAACATATT
TCATGCTGTACATATTCTCCAGACAGTCTTGTACCTGCCCTTTTTTCTGC
CCTTCCCTGCCCTTAGTCTCCTTTCTTTCCTAAATTGTGTTACCATCTTT
TTGTCTCATACACAGACACACAAATACACACAGTCTTATGTTTCTGTTTT
AAATCACTTTTATATCTTTTATAAATGCCAACACCGCACTGAAAATTTAT
GTATGTGTGTGTATATTAAAACCCCCGCGAGAATACATGTGTGCTTGTGT
GTGAGTGTGTGTGTGTATCTTTGCTTTTACACTTAATTATCTTTTTAGGA
ACTCTATGCAAATAGAAAAAATTTAGAGAACATGTTAAGGCCCTGGTTAA
CATATCCCAAACTGAGAATAACTACAAAGAAACAACCTCTTTCATTATGC
CCGAACTCCTAAAGGATCCATTATCTCTTAATACCACCACAGTAGTTGGG
TGGAGGTGCAATACATAAACCTTTGGGGTAAAAAGAATATTTAAACTATA
AGAGCTATAATGCCAATTAAGTAATTCTACCATTGAATTTGACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_d18.g1 MSMg01no317_d18.g1 CHROMAT_FILE:
MSMg01no317_d18.g1 PHD_FILE: MSMg01no317_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:13 2005
         (313 letters)



>mm_chr4_92997131_92997845
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 312/314 (99%), Gaps = 2/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatgtgtgcttgtgtgtga--gtgtgtgtgtgtatctttgcttttacacttaattatc 58
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatgtgtgcttgtgtgtgagtgtgtgtgtgtgtatctttgcttttacacttaattatc 260

                                                                       
Query: 59  tttttaggaactctatgcaaatagaaaaaatttagagaacatgttaaggccctggttaac 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaggaactctatgcaaatagaaaaaatttagagaacatgttaaggccctggttaac 320

                                                                       
Query: 119 atatcccaaactgagaataactacaaagaaacaacctctttcattatgcccgaactccta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcccaaactgagaataactacaaagaaacaacctctttcattatgcccgaactccta 380

                                                                       
Query: 179 aaggatccattatctcttaataccaccacagtagttgggtggaggtgcaatacataaacc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggatccattatctcttaataccaccacagtagttgggtggaggtgcaatacataaacc 440

                                                                       
Query: 239 tttggggtaaaaagaatatttaaactataagagctataatgccaattaagtaattctacc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggggtaaaaagaatatttaaactataagagctataatgccaattaagtaattctacc 500

                         
Query: 299 attgaatttgacaa 312
           ||||||||||||||
Sbjct: 501 attgaatttgacaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 715
Length adjustment: 9
Effective length of query: 304
Effective length of database: 706
Effective search space:   214624
Effective search space used:   214624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)