BAC Information

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BAC

Clone NameMSMg01-317F11
Chromosome4 (Build37)
Map Location 124,811,722 - 124,811,965
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317F11.T7 (MSMg01no317_f11.b1)MSMg01-317F11.TJ (MSMg01no317_f11.g1)
ACCAG437439AG437440
length736804
length of high quality
(start - end)
578 (48 - 625)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no317_f11.b1 PHD_FILE: MSMg01no317_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:20 2005CHROMAT_FILE: MSMg01no317_f11.g1 PHD_FILE: MSMg01no317_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCTTATCCCTGATGCACAGCAGGCATAAGCCAGCCTGAGT
ATCTAAGGCTTTGTTAAAAACCACCCAACCGGTGAGATGGCTGAGCGGGT
AAGAGCACTGACCGCTCTTCCAAAGGTCCTGAGTTCAAAACCTAGCAACC
ACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCCTCTGGT
GTGTCTGAAGTCAGCTACAGTGTACTTATGTATAATAATAAATAAATCTT
TGGGCCGGAGCAAGCAGGGACTGAGCGAATGGGGTCAATCCTAAAAATTC
AATTCCTAACAATGACATGATGGCTCACAACCATCTGCACAGCTACAGTG
TACTCACATACATAAGATAAACAAATAAATCTTAAAAAAAAAACCAACCA
ACCAACAGACAAACAAAAACAAAAAACCCCAATGGCTCAGTGGTTAAGAG
CACTGACTGTTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAGAAAGAAA
CCCTGCCATAAAAAAACCAAAGGGGCGGGGGAATGAAGAGGAGGAACAAG
AGGATGAAGATGGGGCGGGGGAAGGGGANNNNTNTTTTTTTTTCTTCTTC
TGTTCTTTTTTCTTTGCTTCCTTCCGTTTTCCCTCTCCCGGTTCCCCTTT
TTCGCGTTCCCCTGCTTTCGCCTTTCTTCTCTTCCN
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTCTAGTTGGGGCCCAACCCT
GCTGCGTGCACTCAGGACTCCCACAATTCTCCCTGAGCCCTTCAGGGCAG
TGATTTTGGGTGATAGCCTCTTACTTGCCTTCAGGCCCACCTCTTTTTGG
AGGTTCAAACCTCTCCCCCACCCCCCCACACACCCCATGAAGGCTGTTCA
CTGCTGTCAATGTTAAGGCCTTCAGTCTTGCTCTCCAGCCAGAACTTGCT
CTTTTGGGGTGGGGTGGGTTGGGGTNANTTNTTNNTTTTATTTATAAAAA
NAAAATTTTTATATTTTTCCCCCCCCCCCCCCCCCAAAATTAAAAAANAA
NGGGAANNNNNGGGTTGGCCCCCCAAAAAAAAAAAAAAAACTTTGGGGCG
GGGGGGGGGGGTTTTTGCCCCCCCTTCCCCCCTTTCATTTTCCCGTTCTT
CATTTTTTGATCTGTTTATTCCCTCTACCCCCTCACTTCATTTCTCCCTC
GCCCTTTTTACCTACCCTCCTTTTTTTTTTCCCCCCCCTCTTTCTCTCCT
TTATATCCTCCCTATTTATCCCCGCCAGTCTCTTATCCCCCTCCGCTTTT
TTTTCCTTTGCTTTATCCCCTCTCGCTCTCTATTCCTTCGCACGTACCCT
TTATTATTCCATCCCCGTTCTCCTCCTTTTTTTTTTTCCCCCCCTTCCTA
CACCTCCTCCGCTTTACCCCCCCTTCCTCGTCTTTGCTATTCCCTCTTAT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_f11.g1 MSMg01no317_f11.g1 CHROMAT_FILE:
MSMg01no317_f11.g1 PHD_FILE: MSMg01no317_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:21 2005
         (241 letters)



>mm_chr4_124811522_124812165
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 239/244 (97%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctctagttggggcccaaccctgctgcgtgcactcaggactcccacaattctccctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actctctagttggggcccaaccctgctgcgtgcactcaggactcccacaattctccctga 385

                                                                       
Query: 61  gcccttcagggcagtgattttgggtgatagcctcttacttgccttcaggcccacctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcccttcagggcagtgattttgggtgatagcctcttacttgccttcaggcccacctcttt 325

                                                                       
Query: 121 ttggaggttcaaacctctcccccacccc---cccacacaccccatgaaggctgttcactg 177
           ||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||
Sbjct: 324 ttggaggttcaaacctctcccccaccccacccccccacaccccatgaaggctgttcactg 265

                                                                       
Query: 178 ctgtcaatgttaaggccttcagtcttgctctccagccagaacttgctcttttggggtggg 237
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtcaatgttaagggcttcagtcttgctctccagccagaacttgctcttttggggtggg 205

               
Query: 238 gtgg 241
           ||||
Sbjct: 204 gtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 644
Length adjustment: 9
Effective length of query: 232
Effective length of database: 635
Effective search space:   147320
Effective search space used:   147320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)