BAC Information

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BAC

Clone NameMSMg01-317G07
Chromosome4 (Build37)
Map Location 35,904,005 - 35,904,346
singlet/doubletsinglet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317G07.T7 (MSMg01no317_g07.b1)MSMg01-317G07.TJ (MSMg01no317_g07.g1)
ACCAG437474AG437475
length770710
length of high quality
(start - end)
346 (76 - 421)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no317_g07.b1 PHD_FILE: MSMg01no317_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:24 2005CHROMAT_FILE: MSMg01no317_g07.g1 PHD_FILE: MSMg01no317_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTCAATTGTTCCTACCCTGGGTCAAAGTATGATCCAGTAAATG
TGATCTGGAATCAATTTACCACTCTTCTTGGTCCATGTTTTCATGTGTGG
ACCCATGAGCTCTGTGCCCAGGTGTGTGCATGTGCAGAAGTGGATGGGTA
TTCAGAGACTGCAGGTTAGCCTTGGGTGCTATTCTAAGTCTCTTCTCACC
TGATGTTTTGATACAGGATCTGTCACTGAAGCCAGAGGTCACTGATTGAT
CTCCATTGACTTTCCATCAAACCCCTTCGACACACATGTCTATAAACCCT
TTTGGAAATGGGACTGTTTATTTTATTCTCACATACAGCCTTTATATTCG
TGGTTTTGTTTGAACTCACCCCCCCCGCGCCTGTGTAGCAAGTGCACAAA
AAGTCATTAACCACGCTCTTTTCCCCAGAACACCATATTTTTAACAAATA
CACATGGGAATTTTTTTTTATTTTACATACAGCTAATTACACTTCGAAAA
GCAGTGCAAGTATTTGGAAGCTGATGCATTTTAATCTAACATAGAACTAT
CCCAGAAATATTTGAAATACTGGAGCTCTTTCTTCAACACTATCATCTTC
CATTCCTTATCATGTTGTCAGTGTTTGGCCATTTACTCTGTTCATTTTGA
TCCTTACTAGTTTTTCAACTATGGGTCTGAGACACAGCAGAGAGACTCAT
TTTTCCCTATGGGTATTTGG
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
AATGGGGTTATTTGATTTTCCGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGTCTTTTTGTCTTATTGATGATGTCTTTTGCCTTGCA
GAAGGTTTGCAGTTTCATGAGTTCCCATTTGTCAATTCTCGATCTTACAG
CACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCT
TCAAGGCTTTTCCCCACTTCAGATTTTTAAAACATTATTGAAAGTACCCA
TGCTGTATAAAGCCCCCCCCTAAATTGCCCTTTATAGCCAAAAAAGGCAC
ATATATTTTGAATTTTAATTATTTATTGAAATGGTTTCATTATCCAAATT
ATAAGTGCTGGTACCCTAGTAAAATGATTGTCACTGAGAAATGTGAGTAA
AATTTCCATGTGCAGAGTTTGAAAAACCCAGACGTATATGGTTACACAAT
CTAGTCATCACAGTTCTCCAAGGCAGCATTGGCTAAAATAGAAAATGTAA
CACCATATCAAAAACAGGTTCACTATCTGTCTTAATTTGGGTAACTCTTG
CTGTGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_g07.b1 MSMg01no317_g07.b1 CHROMAT_FILE:
MSMg01no317_g07.b1 PHD_FILE: MSMg01no317_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:24 2005
         (346 letters)



>mm_chr4_35903805_35904550
          Length = 746

 Score =  555 bits (287), Expect = e-162
 Identities = 329/343 (95%), Gaps = 1/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtcaaagtatgatccagtaaatgtgatctggaatcaatttaccactcttcttggtcca 60
           |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct: 201 gggtcaaagtatgatccagtaaatgtgatctggaatcagtttaccgctctttttggtcca 260

                                                                       
Query: 61  tgttttcatgtgtggacccatgagctctgtgcccaggtgtgtgcatgtgcagaagtggat 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgtgttcatgtgtggacccatgagctctgtgcccaggtgtgtgcatgtgcagaagtgggt 320

                                                                       
Query: 121 gggtattcagagactgcaggttagccttgggtgctattctaagtctcttctcacctgatg 180
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 321 gggtattcagagactgcaggttagcctt-ggtgctattttaagtctcttctcacctgatg 379

                                                                       
Query: 181 ttttgatacaggatctgtcactgaagccagaggtcactgattgatctccattgactttcc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttgagacaggatctgtcactgaagccagaggtcactgattgatctccattgactttcc 439

                                                                       
Query: 241 atcaaaccccttcgacacacatgtctataaacccttttggaaatgggactgtttatttta 300
           ||||||||||  |||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 440 atcaaaccccagcgacacacatgtctataaactcttttggaaatgggactgatgatttta 499

                                                      
Query: 301 ttctcacatacagcctttatattcgtggttttgtttgaactca 343
           ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 ttctcacatacagcctttatattagtggttttgtttgaactca 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)