BAC Information

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BAC

Clone NameMSMg01-318G04
Chromosome4 (Build37)
Map Location 70,643,181 - 70,643,428
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638, EG667649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318G04.T7 (MSMg01no318_g04.b1)MSMg01-318G04.TJ (MSMg01no318_g04.g1)
ACCAG438202AG438203
length733710
length of high quality
(start - end)
249 (73 - 321)105 (127 - 231)
definitionCHROMAT_FILE: MSMg01no318_g04.b1 PHD_FILE: MSMg01no318_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:33 2005CHROMAT_FILE: MSMg01no318_g04.g1 PHD_FILE: MSMg01no318_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCTAACAGATTTCCACAGACTGGTCATGTGCTGACTCATGTGCCCTGGT
ATGACTTAGTTTTGACCATCCCTACCAGCAGCCTTTTTCCATATCATTAA
AAACATTCATTACTGTGTCCCTGAGGTTTGCATATGTCTCACTGGCATTT
TTTAACTACTCATTTTTTTTGATTACTGGCTGAGAGTCCCCAAAATTTGA
TCATACTAACAGGCTAGGACCTTTCTATTTTGGAAAGAAGCTGATCTATG
AATGTTTATTCCAATTTTGGTCTTCTGTCTGTTGCTTTCCAAAATATAGA
TTTCCAATGTATTTTTTTGACGCCCGCCCCCCCCATTGTATTCTGAATAA
TTATTGCTGACGTTTACCCCCCCTTCAGAGAGACTACTTCTGTAAGAATA
GGTTGGATATGTTTCATTAGATCATCTGCTTCTAATACCAGTGCATGCTA
AGCTGTAGCATGACCATAGACTAGGATTAGTACCGTATATTGCTCCTATG
AACACGAAACTGCTAATACGCAAATCCAGATGCCTTGACAACTAACAATG
ATACACACACACTTACCCCCTCTTATATATAGTTTAAATTCAATACCCTT
TGATAACCCTGTCCATTATACGCACCCTATTCCTATAATTTCACCCTTTT
TAACCCTCATTATTTTAATAACTAGTTGCCTTT
AAGTGGGAGGCCTGGNGGCGCCTGGATTCGNCAGGGGGGGAACNANANAA
GTTTACANCACTCGGGACAAAGANGNCNCCTCTACCCTNNCCAGAAAGGA
AAATCACGCCAANGGCCNAAAACCCAAGGAAAGAAACTGGCTGCATCGGG
CATTATATAATAATAATAATAATAATAATAATAATAAATTAATGAGATTG
TTTTTAATCAGCAGGAACTTAGAGGACAGGTCTCTTATTACTGTGGCTAC
ACCCCAAAGAGTTAATGTGTACAGACAAATGCTATTTATTATTATTCATT
TTTTTTTTTTACANTAGAATTCTCAATGGCATATCTACCTTTTTTATTTT
CCCCCCCCCCCCCCCCCCATTTTGTTACTTGATTTTTTACCATTAATTCC
CCCCCGCAAACAAAAAAAATCGCGTTCCCTTAATAGGTATATCTAGTGCC
AATCATGCTTATGGCGGTAGTTAGAAAATGTGCTTACTTGATCTTCCGAT
CATTTTTAGTTATAGTACCCTACAATATCAGACATGTCTAGGCAGGCATT
ACGAGAAACCCTTGCCGACGCCATGAATGTCACCTTTTTAAGAGCTATTG
CACCCTCGGATTCGCATATGTTCCTCCCAGGGTCCGTGAATTTTTTTCTT
TTATCCTCATCATGTAACTCCTGCTAAGCTGAATTACTTTTTATGACATC
GCTTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_g04.b1 MSMg01no318_g04.b1 CHROMAT_FILE:
MSMg01no318_g04.b1 PHD_FILE: MSMg01no318_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:33 2005
         (249 letters)



>mm_chr4_70642978_70643628
          Length = 651

 Score =  441 bits (228), Expect = e-128
 Identities = 243/248 (97%), Gaps = 2/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   catgtgctgactcatgtgccctggtatgacttagttttgaccatccctaccagcagcctt 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 451 catgtgctgactcatgtgccctggtatgacttagttttgaccatccataccagcagcctt 392

                                                                       
Query: 64  tttccatatcattaaaaacattcattactgtgtccctgaggtttgcatatgtctcactgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tttccatatcattaaaaacattcattactgtgtccctgaggtttgcatatgtctcactgg 332

                                                                       
Query: 124 ca-ttttttaactactca-ttttttttgattactggctgagagtccccaaaatttgatca 181
           || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 331 catttttttaactactcatttttttttgattactgggtgagagtccccaaaatttgatca 272

                                                                       
Query: 182 tactaacaggctaggacctttctattttggaaagaagctgatctatgaatgtttattcca 241
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 tactaacaggctaggacctttcttttttggaaagaagctgatctatgaatgtttattcca 212

                   
Query: 242 attttggt 249
           ||||||||
Sbjct: 211 attttggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space:   154080
Effective search space used:   154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)