Query= MSMg01no318_g22.b1 MSMg01no318_g22.b1 CHROMAT_FILE:
MSMg01no318_g22.b1 PHD_FILE: MSMg01no318_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:36 2005
(294 letters)
>mm_chr4_97901580_97902273
Length = 694
Score = 426 bits (220), Expect = e-123
Identities = 277/312 (88%), Gaps = 28/312 (8%)
Strand = Plus / Minus
Query: 1 ggatggttcaactaatgtgaatcaataaacgtaatgtatcctgtaaatatacctaaggat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 667 ggatggttcaactaatgtgaatcaataaacgtaatgtatcctgtaaatatacttaaggat 608
Query: 61 agaaattacgtgattatattcatagatgtagaaaaggcgtttgacaaaatc--------- 111
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agaaattatgtgattatattcatagatgtagaaaaggcgtttgacaaaatccaacatctc 548
Query: 112 ---------aaaacatggaagaaactttgaatataagaaatataatatatcctccagccc 162
||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 547 tttatgataaaaacatggaagaaactttgaatataaga-----aacgtatcctccagctc 493
Query: 163 ccccccagctgcagtgagggcaccaggtcactacttcaagtagggcccagaagagggagg 222
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccc----gctgcagtgagggcaccaggtcactacttcaagtagggcccagaagagggagg 437
Query: 223 aggcactgcctccaggatagtaactttacaactcaatgcagagcatcaa-tgggtggtgg 281
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct: 436 aggcactgcctccaggatagtaactttacaacacaatgcagagcatcaattgagtggtgg 377
Query: 282 tgggtgatgggg 293
||||||||||||
Sbjct: 376 tgggtgatgggg 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no318_g22.g1 MSMg01no318_g22.g1 CHROMAT_FILE:
MSMg01no318_g22.g1 PHD_FILE: MSMg01no318_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:37 2005
(295 letters)
>mm_chr4_97739541_97740225
Length = 685
Score = 505 bits (261), Expect = e-147
Identities = 283/295 (95%), Gaps = 10/295 (3%)
Strand = Plus / Plus
Query: 1 gtttttattatttcaagggtcatagcactgaactagacgaaaaacacaggacccagagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttttattatttcaagggtcatagcactgaactagacgaaaaacacaggacccagagct 260
Query: 61 ggggaaagaaactaaggccagaattgcagggatgggcggctcagtaccagagtacttact 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaagacactaaggccagaattgcagggatgggcggctcagtaccagagtactt--- 317
Query: 121 tgcctgatgcgcaggagactatgaggccagctcagaggagggatcagtctgagaggcaga 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 -gcctgatgcgcag---actatgaggccagctcagaggagggatcagtctgagaggcaga 373
Query: 181 atggaatggaaggctaaatctacgtgaataacctccgacagttcaagtatatattttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atggaatggaaggctaaatctacgtgaataacctccgacagttcaagtatatattttcca 433
Query: 241 tagcttttttttttggtttctttttactttttgagttgacatgtgagtattaaga 295
||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tagctttttttgtt---ttctttttactttttgagttgacatgtgagtattaaga 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 685
Length adjustment: 9
Effective length of query: 286
Effective length of database: 676
Effective search space: 193336
Effective search space used: 193336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
