BAC Information

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BAC

Clone NameMSMg01-318H08
Chromosome4 (Build37)
Map Location 91,666,263 - 91,666,607
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318H08.T7 (MSMg01no318_h08.b1)MSMg01-318H08.TJ (MSMg01no318_h08.g1)
ACCAG438256AG438257
length836797
length of high quality
(start - end)
244 (73 - 316)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no318_h08.b1 PHD_FILE: MSMg01no318_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005CHROMAT_FILE: MSMg01no318_h08.g1 PHD_FILE: MSMg01no318_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAGGTCCGCGGAA
TTCAACAAATTCTAGCATTGAGTGTGCTACCCCTCATACCATGTATAACT
TTCAGCTAGTTCATGGTGTTAAAAATCCCAAGAGCTCCCAGGAACTAAAC
CACCAACAAAAGAGCAGCAGAGGATGGCCTTGTCAGACATCAATGGGAGG
AGAAGCCCTTGGTCCTGGGAAGGCACAATGCCCCAGTATAGAGAAATGCC
AGGGCAAGGAGGTGGGTGGGTGAGCACCCTCATAGATGTGGGGGGAGGGA
GGATGGGTTAGAGGNTNNNNNTTTTTTTTTTTNNNTTATTTTTTTTTTTT
NTTTTTTATTNTTTTTTTATGTTATCCTTTCATACTTTATATTCACTCTC
TTTCCTCTTTTTTTTTGACCCCACACCCCCCCCCCCAATATAATTTTATT
TTTATTAAAAGATACCCTTCTCTTTCCTTATTGCTGACCCTCCTCTAATT
CTTTCATTTTTTTTTCTCTTCTTTCTCTATCTTTCTCCTTAATGTTAATT
TATAATTTTTATCATTTTTCCCTTTTATCTTCACATTAATATCATTCTTA
ACAATTATTTATCTCTTTCCACTCATTACTTTTTTACACATATACCCAAT
CACACTCAATCTAAAGATCCAATATACAAACTTGTTGTCTAACTAATCTT
ATCCTACATATTTACATAAATTTTCTATCATAACATCCATCTTCTTTTGT
TCATTTCTTATTCCATTTTTCTACTTTATTCTCCTTCATATACATACTCT
TTATAACTTCCTGTTTTAGTCCCATATCACACTTCT
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATCACTTTGTGGAGCTTCTAAG
TCCAATGATGGATTTACCAATAATTGACTATTAAATGGGTCAAGTTATTG
ATACTTGATATTAGAAAAAAATGTGTTGATATTAGAAAAAAAATATGAAG
GTGTTGGGCAAAAAGGGACAAAACCAAGAAATGATGCTGTTAGGAGGGAG
AATATACTCCACATGCCAGAAGAAGGTAGGAGTTAAACTTAGAACTGCCA
CAGAAATTTTTCTAGAGAAAAGGAAAATAAAACATAATCACTCCTTCCTT
TCAGATAATATTTAGTACCACCATGTGTAATAACATCCAGCACAATTTGT
CCATCCACTTCTAATTACCATTCCCCCCCCAACATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGTTTCTTCTCTCTCCTATTTTTCTTCTTTTTCTATC
CACTTCCCCCCTCCTTTTTTTTTTCTTACTTTTTTCATTTCTACTCCCCA
TTTCTTTCTTTACCTCTCTCTTCTTTTTTCTTCTTCCTATCCTTTCTCTT
TTTTGTCTCTTATTCTCTCTCTTACACCCTTCTCCTCCTCTTTTTTTTCT
TCCTTCCATTATTCTACTCTCCTTCCTTTTTTCTCCTCGCCTCCCCTCTA
TCCACCCTTATCTCTCATCCCTTATCCCTACTCTCTTTTTATTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_h08.g1 MSMg01no318_h08.g1 CHROMAT_FILE:
MSMg01no318_h08.g1 PHD_FILE: MSMg01no318_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:38 2005
         (346 letters)



>mm_chr4_91666063_91666807
          Length = 745

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%), Gaps = 1/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcactttgtggagcttctaagtccaatgatggatttaccaataattgactattaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ccatcactttgtggagcttctaagtccaatgatggatttaccaataattgactattaaat 486

                                                                       
Query: 61  gggtcaagttattgatacttgatattagaaaaaaatgtgttgatattagaaaaaaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 485 gggtcaagttattgatacttgatattagaaaaaaatgtgttgatattag-aaaaaaatat 427

                                                                       
Query: 121 gaaggtgttgggcaaaaagggacaaaaccaagaaatgatgctgttaggagggagaatata 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaaggtgttgggaaaaaagggacaaaaccaagaaatgatgctgttaggagggagaatata 367

                                                                       
Query: 181 ctccacatgccagaagaaggtaggagttaaacttagaactgccacagaaatttttctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctccacatgccagaagaaggtaggagttaaacttagaactgccacagaaatttttctaga 307

                                                                       
Query: 241 gaaaaggaaaataaaacataatcactccttcctttcagataatatttagtaccaccatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaaaaggaaaataaaacataatcactccttcctttcagataatatttagtaccaccatgt 247

                                                         
Query: 301 gtaataacatccagcacaatttgtccatccacttctaattaccatt 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtaataacatccagcacaatttgtccatccacttctaattaccatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)