Query= MSMg01no318_h22.b1 MSMg01no318_h22.b1 CHROMAT_FILE:
MSMg01no318_h22.b1 PHD_FILE: MSMg01no318_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:41 2005
(349 letters)
>mm_chr4_88693114_88693866
Length = 753
Score = 594 bits (307), Expect = e-174
Identities = 340/353 (96%), Gaps = 4/353 (1%)
Strand = Plus / Plus
Query: 1 aaatatttattgtaaacgcatttattttctctctgctgtggtaaactttcctgcagaaaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aaatatttattgtaaacgcatttattttctctctgctgtggtcaactttcctgcagaaaa 260
Query: 61 tcaaggaaaag----aaaaaaacacagctctattttcaacacgtcaatctgctcagactc 116
||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 261 tcaaggaaaagaaaaaaaaaaacagagctctattttcaacacgtcaatctgctcatactc 320
Query: 117 ttaggacattctgtctctaattgagtttaccttgaaaatacaaaacaacaaagaactgag 176
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 321 ttaggacattctgtctctaattgagtttaccttgaaaatgcacaacaacaaagaactgag 380
Query: 177 tgtcttctatgtagcattcaataataattttcattaaatccattgtgggacttctaggta 236
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttctatatagcattcaataataattttcattaaatccattgtgggacttctaggta 440
Query: 237 attgcatccatttcaggaaggagagtacccaacctcaaaaagtttaaggatcttgtccaa 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcatccatttcaggaaggagagcacccaacctcaaaaagtttaaggatcttgtccaa 500
Query: 297 acttagaatcaataatcagaaatcacacctggttctctttctcaccaaaatgc 349
|||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 501 acttagaatcaataataagaaatcacacctggttccctttctcaccaaaatgc 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 753
Length adjustment: 9
Effective length of query: 340
Effective length of database: 744
Effective search space: 252960
Effective search space used: 252960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_h22.g1 MSMg01no318_h22.g1 CHROMAT_FILE:
MSMg01no318_h22.g1 PHD_FILE: MSMg01no318_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:41 2005
(344 letters)
>mm_chr4_88827402_88828145
Length = 744
Score = 576 bits (298), Expect = e-169
Identities = 328/342 (95%), Gaps = 10/342 (2%)
Strand = Plus / Minus
Query: 3 gtcttcccctagcagctttcagatgaagatgtagctctgcctgcaccatgcctgcctgcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtcttcccctagcagctttcagatgaagatgtagctctgcctgcaccatgcctgcctgcc 675
Query: 63 tagatgttgccatgttctcaccttgatgatgatgatggactgaacctctgaacctgtaag 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tagatgttgccatgttcccaccttgatgatgatgatggactgaacctctgaacctgtaag 615
Query: 123 ccagctccaattaaatgttgtcctttataagacttgtcttagtcatggtgtctgtttagc 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 614 ccagctccaattaaatgttgtcctttataagacttgtcttagtcatggtgtc----tagc 559
Query: 183 agtaagtctaactaagacacctatgaacatctgaatgattagtaacctaacataaactgc 242
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 558 agtaagt----ctaagacacctatgaacatctgaatgattagtaacctaatataaactgc 503
Query: 243 aaaaagcaagttcaccaccgatcc-agtgctagggaggccccctggacagggagcgaagg 301
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 502 aaaaagcaagttcaccaacgatccaagtgcta-ggaggccccctggacagggagcgaagg 444
Query: 302 gagctagcctgaggaccactagtctggcactgtgcagaacct 343
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagcttgcctgaggaccactagtctggcactgtgcagaacct 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
