BAC Information

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BAC

Clone NameMSMg01-318K08
Chromosome4 (Build37)
Map Location 15,025,186 - 15,025,479
singlet/doubletsinglet
Overlap geneEfcbp1
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318K08.T7 (MSMg01no318_k08.b1)MSMg01-318K08.TJ (MSMg01no318_k08.g1)
ACCAG438388AG438389
length732724
length of high quality
(start - end)
296 (68 - 363)298 (69 - 366)
definitionCHROMAT_FILE: MSMg01no318_k08.b1 PHD_FILE: MSMg01no318_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:52 2005CHROMAT_FILE: MSMg01no318_k08.g1 PHD_FILE: MSMg01no318_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAAT
TCAACAACTCATTTCAAGAAATACAGGAGAACACTGCTAAAGAGTTACAA
GTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAA
AGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAAC
AGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGAC
CTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCT
GGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCA
GCAACAGAATACAATATATGGAAGAGAGAATCCCAGGTGCATAAGACTCC
ATAGAGAACATCAGCACAACCACCACCCACAATGGAAAATGCATAAAGAT
CCTAATTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACC
TACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCA
GCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTACAGAA
AGAGATGCCCATGAACATACTAGAAGCCTACAGAACTCCAAATAGACTGG
ACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCA
CTAAATAAAGATAGAATACTAATAGCAGTAAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCCAATTCCATTACTTGAAAAATGATCAAACCTTTTTCT
GTGGTCTAGGAAATAAATGCCCACAATTACTATTTATTATCATTTTGTAT
TTGTTTAACACTATAAATAATAGTACTAAAACTGTGTCTAGTATGTTTAA
TTCCCTCCTATAACACAATCTTTTTTAACTTCATGGTAAGAAATTGTATA
TTTCCTGGATTTGTTTAAATGAGAAAAGCTGAAAAGTAGTGTTCAAAATC
AGATTTGTTGTTTGTTATTAAATCTAATTCCTTTGAATTCCTACCTGTAT
TCTGATTTCTCATTCTTGGATTTCAGGTCACCACATTGTATTATTTCGGT
TTTTTTCTATTGCACCCCCCCTGATTCATGAAAATGCATTGAAATTATGT
ATTTTAAAAAGGTATCTCCAGAGATATCTATTCCAGTAAAAGCACTAGAG
CATGCTTCCCCCGCCTTTCCACACAAACACACCAAGTCCACTCATCACTG
CCCATGTTGGTATAGATGTAGGATCATTTCCTGCAGCATGGGTAGCCCCT
CAGACAGCATCACCTTGAAGACAATGAAGTCACCCTCTCCTAGCATCCAT
CAGTTGCCAGTATCTCATCACATAATGTTAGAACTTTCCCTCCCCTCCTC
TGGTCATTTGTCTGGCTTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_k08.g1 MSMg01no318_k08.g1 CHROMAT_FILE:
MSMg01no318_k08.g1 PHD_FILE: MSMg01no318_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:52 2005
         (298 letters)



>mm_chr4_15024986_15025683
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattacttgaaaaatgatcaaacctttttctgtggtctaggaaataaatgcccacaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 494 ccattacttgaaaaatgatcaaacctttttctgtggtctaggaaataaatggagacaatt 435

                                                                       
Query: 61  actatttattatcattttgtatttgtttaacactataaataatagtactaaaactgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 actatttattatcattttgtatttgtttaacactataaataatagtactaaaactgtgtc 375

                                                                       
Query: 121 tagtatgtttaattccctcctataacacaatcttttttaacttcatggtaagaaattgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagtatgtttaattccctcctataacacaatcttttttaacttcatggtaagaaattgta 315

                                                                       
Query: 181 tatttcctggatttgtttaaatgagaaaagctgaaaagtagtgttcaaaatcagatttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatttcctggatttgtttaaatgagaaaagctgaaaagtagtgttcaaaatcagatttgt 255

                                                                 
Query: 241 tgtttgttattaaatctaattcctttgaattcctacctgtattctgatttctca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtttgttattaaatctaattcctttgaattcctacctgtattctgatttctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)