NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATGAGCTTGCCACCTAAGCCACAGTTGACCAAGCATT
CAAGGATCCCATGTTTTCCAAGTGGTAAACCTGGATAGGGACTGAGCTGT
GCCCTCTAAGGATGCCACTTGAGTGGCCCACCCGTCTGTGACTGCTACGG
GAACTCAGGCTTTCTGCAAGCTGGAGAACATGTACAGGCTGTTGGCCCAG
CATTCCTGGCCGTGTGCTTCTCTGGCTGCTGGGGACTGCTGTCTTCTGGG
GCTTATCTGCTATTGGGACACAAGGTGACTCTAACAAAGATCAGATCCAC
ATGCTGCCAGTGTCACGGTTTCTGTCGGGAGGCAAGCCGTACACTTCCAG
ACAGTGGGAGAGGTTAGAAAGGCCCCCCCCCCTCACCAGCATCAACTCAG
CCATTGCATTCGCCCGATTTGCTGTAGAAAGGCTTGCATTTAAAAATTAA
TAAGTGAGCTCATTTGAGACCTTGTTAGCTGCGATTGCTCCATTTTCAGG
AGAAACTTGGCTTCCATCGTGATTTAAGTGCAGTGTGTGGCTTTGTTCTT
TATTTTTATAGCAGTACATGGTCACTGAACCGCTTGACCTAAGATGACGC
TGCTGGCAATGATTTGTGTCTCTCTCTTTTCGATTTTAGAGCTTCCTCCC
TGTAGATCCTTTCCCACTAATCCTTTCCTTATTTGTTTCCTTA

AAAAATGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCGAGGCTTCGTGT
GACATTGTGTGGCAGTTTTCCTGGGACAGACCAGGCCCAGATTTGGGGTG
TTTGCTGTGTGGTGTGGCATCCCTGGCCACAGACCCTTCCTGCTTTGTAT
CACCTGGTCTAGGTCTCAGGACCAGACATTTCTGACTTAAACTTGGGGTT
AAAAGCATTGGATTTCTGACTTAGACATTAAACCGTGAGCAACCAGGAAT
TTGCCATGGCAAGTGGTAGGAAATGGGGTCTCATGGGTGACAGCAGATAG
ACACATGTCCATTTGTTGTCTGGAATTCACAGCATGTTTGGAGAACCTGG
AATTGGCTCCTCACAGCAGTGGACACCCCCCGCCCCCCCACACAGCAGCA
CTCATGTGCTCCTGGGTCTCTGAGAACATCTTGCTGGTTTCTTCTTCCCT
CCTTGCCTTGCAGCCCGGATCTCAGGGACATTTAGGGCAGGGCAGAGGCA
CTGCAAGGCCTGGGGTGACGAGTCTGTCTTTAGACTGAGCTAGTGACAGG
CCCGGGATGTAGCATAGGGCATGGTCCCCACTGGCAGGTGCTCGTGTGCA
CCTTACAGTGGTGTCAGGCTACCTGTTGCTGACCATCTGGCTCTTCCCTC
CCTCCTTCCCTCCCTCCCTCCCTCCCATATATGGTT

Query= MSMg01no318_l17.b1 MSMg01no318_l17.b1 CHROMAT_FILE:
MSMg01no318_l17.b1 PHD_FILE: MSMg01no318_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:58 2005
         (238 letters)



>mm_chr4_151785389_151786026
          Length = 638

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatagggactgagctgtgccctctaaggatgccacttgagtggcccacccgtctgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggatagggactgagctgtgccctctaaggatgccacttgagtggcccacccgtctgtgac 377

                                                                       
Query: 61  tgctacgggaactcaggctttctgcaagctggagaacatgtacaggctgttggcccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgctacgggaactcaggctttctgcaagctggagaacatgtacaggctgttggcccagca 317

                                                                       
Query: 121 ttcctggccgtgtgcttctctggctgctggggactgctgtcttctggggcttatctgcta 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 ttcctggccgtgtgcttctctggctgctggagactgctgtcttctggggcttatctgcta 257

                                                                   
Query: 181 ttgggacacaaggtgactctaacaaagatcagatccacatgctgccagtgtcacgg 236
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgggacacaaggtgacactaacaaagatcagatccacatgctgccagtgtcacgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no318_l17.g1 MSMg01no318_l17.g1 CHROMAT_FILE:
MSMg01no318_l17.g1 PHD_FILE: MSMg01no318_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:58 2005
         (341 letters)



>mm_chr4_151632828_151633568
          Length = 741

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccgaggcttcgtgtgacattgtgtggcagttttcctgggacagaccaggcccagatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 tccccgaggcttcgtgtgacattgtgtggcagttttcctgggacagaaaaggcccagatt 260

                                                                       
Query: 61  tggggtgtttgctgtgtggtgtggcatccctggccacagacccttcctgctttgtatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtgtttgctgtgtggtgtggcatccctggccacagacccttcctgctttgtatcac 320

                                                                       
Query: 121 ctggtctaggtctcaggaccagacatttctgacttaaacttggggttaaaagcattggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtctaggtctcaggaccagacatttctgacttaaacttggggttaaaagcattggat 380

                                                                       
Query: 181 ttctgacttagacattaaaccgtgagcaaccaggaatttgccatggcaagtggtaggaaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ttctgacttagacattaaaccgtgagcaaccaggagtttgccatggcaagtggtaggaaa 440

                                                                       
Query: 241 tggggtctcatgggtgacagcagatagacacatgtccatttgttgtctggaattcacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggtctcatgggtgacagcagatagacacatgtccatttgttgtctggaattcacagc 500

                                                   
Query: 301 atgtttggagaacctggaattggctcctcacagcagtgga 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttggagaacctggaattggctcctcacagcagtgga 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)