BAC Information

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BAC

Clone NameMSMg01-319E05
Chromosome4 (Build37)
Map Location 65,576,623 - 65,576,909
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319E05.T7 (MSMg01no319_e05.b1)MSMg01-319E05.TJ (MSMg01no319_e05.g1)
ACCAG438835AG438836
length733730
length of high quality
(start - end)
287 (121 - 407)189 (127 - 315)
definitionCHROMAT_FILE: MSMg01no319_e05.b1 PHD_FILE: MSMg01no319_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:34 2005CHROMAT_FILE: MSMg01no319_e05.g1 PHD_FILE: MSMg01no319_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CAGTCTCTTCCACTATTTGTTTGTTTGTTTATTGTGACAGTCACAGGTGC
AGGAATCAGCCTTTTCCCCTCTTTTGTTCTGCTGTAGGGGTTTTGGGTAT
TGAATTCAGGTCACCATGGTTACAGGTAGCCATCTATACCTACCATACAT
CCTATGGATTATTGCTTTCTTCTTAAATGTTGTACAGACCACATAAACAA
GATTCTACATGGTAACAGACTGTGAAACTCTTCCCAGAACTACTTGTCTC
AAAATGTTTATATTTATTCTGTAAGCTTTCTCTATTCAACAAGGAACCCT
GAATGTTATATATTTGACCTTCCATAAAGCATTCTGAGAGGAACAGGCAA
ACCTTTAACTCACACCCCCCACCGAAATGAGTCTCAATCTTTGTTTGGCC
AGCACCTTGCAAGTGTTTGAAAAATAGCCTGTACTTCATAAATATTGGTC
AGAATGAAAAGGTAGTAAGAGGGCATTCACGTGTCATAGAAGGGATCAGG
AGTAGAATTTGAAATATTCTAAAGACGGTTGATAGACTGCGCATATAGTG
AATAACGTTATCTATCTTTCCTTTTCTCCGATCAGGTGGTAGATCATCAG
GTCGTCTTCTTTGCGTGTTGTATGCTTTCTTACCATCTTTCCCCATTCTA
CTTGTCTGGGTTGTTCCGTTGAATACCTGTGTN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGAAAATCAATTGATCTAGATAGGGCAGTTGCAAGAATA
ATGTACTGACATTTTCCCCCATAAGAAGCTGAGAAGTCCTCCACACTAAA
CAAAGAACTACAAGTAACTAAGAAATTCTGAAAGTAAGAGACATGGTTAC
CCGGCCGGGGTGGGGGGGGCACCAACTGGTTATCCAATATCAAATGGTCT
GCTCTGAAAATGTAATGCAAATAGCAACATATACAAAGATACACATAGCG
TATGTAACAACAGTTAATGTAATTGGAGGCCATGAGTTTGAAAAGGAGCA
AGGAGAGATATTTTTAGGATTTGACGCAGCCTAGGAAAGAGGAAATAATG
TAATTATATCATACCCCCCCCCATAAAAAAAATCTTTTTTAAGTGCTTTG
CATACAGGAGAGAAGTCCCTGTGCTAACTGTATTCCTTTTCACAAAAGCG
CATTCATTTCCATTTAGAACTTCTAGATGTTGGAGCCGGAAGGAATCTTG
GAGACCATCTGTGCTCTGGCTAGGGAACATGAAACCAGCTCCTCTCATCC
TGTGAAGTATTGCACTTTGATCATCAGATATAAAAATACCTCCAATTTGA
TTCAGCCTTTCATATATGATGTACTATCCCCACTTGAAATATCATCCACT
CCAATGAGCCCGCTACGTTATTTGTACGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_e05.b1 MSMg01no319_e05.b1 CHROMAT_FILE:
MSMg01no319_e05.b1 PHD_FILE: MSMg01no319_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:34 2005
         (287 letters)



>mm_chr4_65576423_65577109
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgttctgctgtaggggttttgggtattgaattcaggtcaccatggttacaggtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttgttctgctgtaggggttttgggtattgaattcaggtcaccatggttacaggtagc 260

                                                                       
Query: 61  catctatacctaccatacatcctatggattattgctttcttcttaaatgttgtacagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctatacctaccatacatcctatggattattgctttcttcttaaatgttgtacagacc 320

                                                                       
Query: 121 acataaacaagattctacatggtaacagactgtgaaactcttcccagaactacttgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaacaagattctacatggtaacagactgtgaaactcttcccagaactacttgtctc 380

                                                                       
Query: 181 aaaatgtttatatttattctgtaagctttctctattcaacaaggaaccctgaatgttata 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgtttatatttattcagtaagctttctctattcaacaaggaaccctgaatgttata 440

                                                          
Query: 241 tatttgaccttccataaagcattctgagaggaacaggcaaaccttta 287
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttgaccttccataaagcattctgagaggaacaggcaaaccttta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)