BAC Information

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BAC

Clone NameMSMg01-319J14
Chromosome4 (Build37)
Map Location 114,053,826 - 114,054,168
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040607, LOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319J14.T7 (MSMg01no319_j14.b1)MSMg01-319J14.TJ (MSMg01no319_j14.g1)
ACCAG439073AG439074
length722721
length of high quality
(start - end)
293 (427 - 719)343 (70 - 412)
definitionCHROMAT_FILE: MSMg01no319_j14.b1 PHD_FILE: MSMg01no319_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:58 2005CHROMAT_FILE: MSMg01no319_j14.g1 PHD_FILE: MSMg01no319_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTTTG
AAGTCCACCTTCTTGAGTTCTCTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAAATAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCGTTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAGGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCTTATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGCCTTTATGTGAAGTACCTTGATCCAC
TTAGATTTGACCCCACCCACCACGAGATAAGTATGGATCGATTCGCATTC
TTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCAGTATACCAGTACCATGCAGTTTTTATGACAATTGCTCTG
TAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATC
CTTGAGAAGAGTTTTTGCTATC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCAGGATCACTTCTTTGCCTAGTGTTGGTA
CCAATATTTCAAGTCCAGATGTTGGCATCTTGTTTCCAGCATCTTCTTTG
GGAGAGGAAACAGATTTGGGGATTTTTAATGAAGAGAGAAGAAAACATGG
AGTCTTCAGATATCATTCTGACAGGGGACTGGATATATAGCCCAGTTGGT
AGAGTGCTTTACTAATATGCACAAACTCTTGGGTTAAAGCTTGCTTAGTG
TCTTACTTTTCTATTGTTTTGAAGATATAGCACAACCAAGGAAACCTATA
AAAGAAAGCATTTAATTTGGGGGTTCATGGTTCCAGGTTCCAGAGGGTTA
AAGTCCATGATCACCACCCCCGCCCATGGTGTTGGGCAGGTAGGCATGGT
GTGGAGCAGAATCTTAAGGCTCACATCTGATCCACAAAAATGAGATAGAG
ATAGAGATAGAGACAGAGAAGGAGACGGTTAACTGGAAATGGTGTAGGCT
TTTGGTATCTCAAAGCCCACCCCCAATGACACACTCACTCCAATAAGGCC
ACACCTCCTAATCCTTCCCAAACAATTTCACCAACTTTGGACAAAGCATT
ANAAATGAATGTATGGNGGACTTTCTTATTCAAACCACTATCTCCATTGT
GTAGAAAGTCTTGAATTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_j14.g1 MSMg01no319_j14.g1 CHROMAT_FILE:
MSMg01no319_j14.g1 PHD_FILE: MSMg01no319_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:58 2005
         (343 letters)



>mm_chr4_114053814_114054556
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaggatcacttctttgcctagtgttggtaccaatatttcaagtccagatgttggcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agcaggatcacttctttgcctagtgttggtaccaatatttcaagtccagatgttggcatc 296

                                                                       
Query: 61  ttgtttccagcatcttctttgggagaggaaacagatttggggatttttaatgaagagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgtttccagcatcttctttgggagaggaaacagatttggggatttttaatgaagagaga 236

                                                                       
Query: 121 agaaaacatggagtcttcagatatcattctgacaggggactggatatatagcccagttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 agaaaacatggagtcttcagatatcattctgacaggggactggatatatagcccagttgg 176

                                                                       
Query: 181 tagagtgctttactaatatgcacaaactcttgggttaaagcttgcttagtgtcttacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tagagtgctttactaatatgcacaaactcttgggttaaagcttgcttagtgtcttacttt 116

                                                                       
Query: 241 tctattgttttgaagatatagcacaaccaaggaaacctataaaagaaagcatttaatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tctattgttttgaagatatagcacaaccaaggaaacctataaaagaaagcatttaatttg 56

                                                      
Query: 301 ggggttcatggttccaggttccagagggttaaagtccatgatc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ggggttcatggttccaggttccagagggttaaagtccatgatc 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)