BAC Information

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BAC

Clone NameMSMg01-319L17
Chromosome4 (Build37)
Map Location 146,356,037 - 146,356,228
singlet/doubletsinglet
Overlap genenone
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L17.T7 (MSMg01no319_l17.b1)MSMg01-319L17.TJ (MSMg01no319_l17.g1)
ACCAG439167AG439168
length742731
length of high quality
(start - end)
192 (128 - 319)650 (70 - 719)
definitionCHROMAT_FILE: MSMg01no319_l17.b1 PHD_FILE: MSMg01no319_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:07 2005CHROMAT_FILE: MSMg01no319_l17.g1 PHD_FILE: MSMg01no319_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGAAT
TCAAAGAAGGTGACCAAAAATTAATGAAATTCCAGAGAATTCCTACAAGT
GGGTAAGAGAATTATTATACACATGCTGGATGTGAACATCTTATCCAGAG
ATATAATTTACTGGTTTGAATTAAGGTCAGCCTACAAAAGAAATACAGGC
ACGGCACTGGAAACTCAGGCCGAAAGAGTGAATTTATAACTGACATCTGC
TATATGTAGAAATATGGAAATACATTTATATTGTTGGTGCTTTCAGCCTA
AGTCAGACAAACATGAATCGTATTTTTAAACTGCCAATTCAGAGAGAGCT
GAATAATTTTTTTTTTTCTGCCCCCCACCCCACACTGTAAAAGAAGGAGG
AAGTGTAGTTATGGTCCCCCCCCCCCCACAAAAAAAAAGGATNGTGGAAT
TATTAATATATGACAGCATGTATACCCATCCTTAATCTTCCTCATAATAT
ATTTGTTACTCTTTGTTATGATGAAAACCTGAATATCATTGTTATGTTCC
TGCATAGATTATAAGGTATTTACGTCTTCTCGCTTTTACACTCTATTGAC
AATGGTTATTATTATGATCTCTTATTCTTTAAGAAATTTTATTTATCCCA
CGTTAACGCTTTTTTTTTTTTATTCTCGCATTATTTTTATTAATTTATTA
TTTCCCTTTTAGCTTTTCTCCCTTTACTTCAATGTTTTTTTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAATGCACTGA
ATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCATCAGAGAA
TTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACAAATCCTTT
ACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACAGGAGAGAA
ACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAATAAGGCCATC
AGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTATGTGACAAA
TACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATACAGTAGAGA
ATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATC
TTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCAATTATATT
GAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGTTAACAGTG
AATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAGAAATATCT
TTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTTAGGGGAAA
GTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGTTCTATTCT
TGACAATTGAGGCTCCACACTAGAGAATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l17.b1 MSMg01no319_l17.b1 CHROMAT_FILE:
MSMg01no319_l17.b1 PHD_FILE: MSMg01no319_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:07 2005
         (192 letters)



>mm_chr4_146355837_146356429
          Length = 593

 Score =  310 bits (160), Expect = 5e-89
 Identities = 184/192 (95%), Gaps = 1/192 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatgtgaacatcttatccagagatataatttactggtttgaattaaggtcagcctacaa 60
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggatgtaaacatcttatccaaagatataatttactggtttgaattaaggtcagcctacaa 333

                                                                       
Query: 61  aagaaatacaggcacggcactggaaactcaggccgaaagagtgaatttataactgacat- 119
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 332 aagaaatacagacacggcactggaagctcaggccgaaagagtgaatttataactgacata 273

                                                                       
Query: 120 ctgctatatgtagaaatatggaaatacatttatattgttggtgctttcagcctaagtcag 179
           |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||
Sbjct: 272 ctgctatatgtagaaatatggaaatgtatttaaattgttggtgctttcagcctaagtcag 213

                       
Query: 180 acaaacatgaat 191
           ||||||||||||
Sbjct: 212 acaaacatgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 593
Length adjustment: 8
Effective length of query: 184
Effective length of database: 585
Effective search space:   107640
Effective search space used:   107640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)