MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-319L22
Chromosome	4 (Build37)
Map Location	63,425,590 - 63,425,831
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15
Downstream gene	Tnfsf8, Rpl17-ps, Tnc
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zfp618 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72701 MGI:1919950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 54 ESTs, 4 Proteins

name	Ambp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11699 MGI:88002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16552 MGI:1098232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col27a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:373864 MGI:2672118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18405 MGI:97443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435786
definition	note : orosomucoid pseudogene pseudo : _no_value

name	Orm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18407 MGI:97445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18406 MGI:97444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akna (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100182 MGI:2140340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Whrn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 9 mRNAs

name	Atp6v1g1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66290 MGI:1913540
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6330416G13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230279 MGI:1913920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670833 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs

name	1700018C11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75524 MGI:1922774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667451 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 23 Proteins pseudo : _no_value

name	Tnfsf15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:326623 MGI:2180140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfsf8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21949 MGI:88328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl17-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435787
definition	gene_synonym : bN312B5.2 note : ribosomal protein L17 (Rpl17) pseudogene pseudo : _no_value

name	Tnc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21923 MGI:101922
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp618 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252570 GeneID:72701 MGI:1919950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 54 ESTs, 4 Proteins product : zinc fingerprotein 618 transcript_id : XM_001473196.1

name	Ambp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385932 GeneID:11699 MGI:88002
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha 1 microglobulin/bikunin transcript_id : NM_007443.2

name	Kif12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802873 GeneID:16552 MGI:1098232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 12 transcript_id : NM_010616.2

name	Col27a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116063545 GeneID:373864 MGI:2672118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XXVII, alpha 1 transcript_id : NM_025685.3

name	Orm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679181 GeneID:18405 MGI:97443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 1 transcript_id : NM_008768.1

name	Orm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62548315 GeneID:18407 MGI:97445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 3 transcript_id : NM_013623.2

name	Orm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181191 GeneID:18406 MGI:97444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 2 transcript_id : NM_011016.2

name	Akna (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865876 GeneID:100182 MGI:2140340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT-hook transcription factor transcript_id : NM_001045514.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526171 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008796.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526166 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008795.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526162 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008794.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526157 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008793.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57012339 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_028640.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57012337 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008791.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57862815 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008792.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526174 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008797.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526180 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008798.1

name	Atp6v1g1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15617196 GeneID:66290 MGI:1913540
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit G1 transcript_id : NM_024173.1

name	6330416G13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27885006 GeneID:230279 MGI:1913920
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330416G13 gene transcript_id : NM_144905.2

name	LOC670833 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252563 GeneID:670833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs product : hypothetical LOC670833 transcript_id : XM_001472593.1

name	1700018C11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377569 GeneID:75524 MGI:1922774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700018C11 gene transcript_id : NM_029324.2

name	Tnfsf15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778980 GeneID:326623 MGI:2180140
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 15 transcript_id : NM_177371.2

name	Tnfsf8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802454 GeneID:21949 MGI:88328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 8 transcript_id : NM_009403.3

name	Tnc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126722833 GeneID:21923 MGI:101922
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tenascin C transcript_id : NM_011607.2

name	Zfp618 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252571 GeneID:72701 MGI:1919950
definition	codon_start : 1 product : zinc finger protein 618 protein_id : XP_001473246.1

name	Ambp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680684 CCDS:CCDS18248.1 GeneID:11699 MGI:88002
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0019855 - calcium channel inhibitor activity [Evidence ISS]; GO:0046904 - calcium oxalate binding [Evidence ISS]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0020037 - heme binding [Evidence ISS]; GO:0019862 - IgA binding [Evidence ISS]; GO:0030568 - plasmin inhibitor activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0030304 - trypsin inhibitor activity [Evidence ISS] GO_process : GO:0030236 - anti-inflammatory response [Evidence ISS]; GO:0007155 - cell adhesion [Evidence ISS]; GO:0042167 - heme catabolism [Evidence ISS]; GO:0050777 - negative regulation of immune response [Evidence ISS]; GO:0046329 - negative regulation of JNK cascade [Evidence ISS]; GO:0007565 - pregnancy [Evidence ISS]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ulinastatin; Urinary Trypsin Inhibitor; polyprotein product : alpha 1 microglobulin/bikunin protein_id : NP_031469.1

name	Kif12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563262 CCDS:CCDS18249.1 GeneID:16552 MGI:1098232
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : kinesin 12; N-9 kinesin product : kinesin family member 12 protein_id : NP_034746.1

name	Col27a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116063546 CCDS:CCDS18250.1 GeneID:373864 MGI:2672118
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : procollagen, type XXVII, alpha 1 protein_id : NP_079961.3

name	Orm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679182 CCDS:CCDS18251.1 GeneID:18405 MGI:97443
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : bM340H1.2 (orosomucoid 1); alpha-1-acid glycoprotein-2 product : orosomucoid 1 protein_id : NP_032794.1

name	Orm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62548316 CCDS:CCDS18252.1 GeneID:18407 MGI:97445
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : orosomucoid 3 protein_id : NP_038651.2

name	Orm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754950 CCDS:CCDS18253.1 GeneID:18406 MGI:97444
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : bM340H1.5 (orosomucoid 2); alpha-1-acid glycoprotein 1 product : orosomucoid 2 protein_id : NP_035146.1

name	Akna (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865877 GeneID:100182 MGI:2140340
definition	codon_start : 1 product : AT-hook transcription factor protein_id : NP_001038979.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526158 CCDS:CCDS18256.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; whirler; scaffold protein product : whirlin isoform 4 protein_id : NP_001008793.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57012340 CCDS:CCDS18257.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; whirler; scaffold protein product : whirlin isoform 1 protein_id : NP_082916.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57012338 CCDS:CCDS18255.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; whirler; scaffold protein product : whirlin isoform 2 protein_id : NP_001008791.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57862816 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; whirler; scaffold protein product : whirlin isoform 3 protein_id : NP_001008792.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526175 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 8 is encoded by transcript variant 8; whirler; scaffold protein product : whirlin isoform 8 protein_id : NP_001008797.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526167 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 6 is encoded by transcript variant 6; whirler; scaffold protein product : whirlin isoform 6 protein_id : NP_001008795.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526163 CCDS:CCDS18258.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 5 is encoded by transcript variant 5; whirler; scaffold protein product : whirlin isoform 5 protein_id : NP_001008794.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526172 CCDS:CCDS18259.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 7 is encoded by transcript variant 7; whirler; scaffold protein product : whirlin isoform 7 protein_id : NP_001008796.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526181 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 9 is encoded by transcript variant 9; whirler; scaffold protein product : whirlin isoform 9 protein_id : NP_001008798.1

name	Atp6v1g1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15617197 CCDS:CCDS18260.1 GeneID:66290 MGI:1913540
definition	GO_component : GO:0016471 - hydrogen-translocating V-type ATPase complex [Evidence IPI]; GO:0005622 - intracellular [Evidence IDA]; GO:0005765 - lysosomal membrane [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IDA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : lysosomal 13kDa; ATPase, H+ transporting, lysosomal (vacuolar proton pump); ATPase, H+ transporting, lysosomal 13kD, V1 subunit G; ATPase, H+ transporting, V1 subunit G product : vacuolar H+ ATPase G1 protein_id : NP_077135.1

name	6330416G13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27885007 CCDS:CCDS18261.1 GeneID:230279 MGI:1913920
definition	codon_start : 1 product : hypothetical protein LOC230279 protein_id : NP_659154.2

name	LOC670833 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252564 GeneID:670833
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472643.1

name	1700018C11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925638 CCDS:CCDS18262.1 GeneID:75524 MGI:1922774
definition	codon_start : 1 note : bM230C2.3 (novel protein (1700018C11Rik)) product : hypothetical protein LOC75524 protein_id : NP_083600.1

name	Tnfsf15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778981 CCDS:CCDS18263.1 GeneID:326623 MGI:2180140
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence ISS]; GO:0006919 - caspase activation [Evidence ISS]; GO:0042107 - cytokine metabolism [Evidence ISS]; GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : vascular endothelial growth inhibitor; bM20K13.3 (tumor necrosis factor (ligand) superfamily, member 15) product : tumor necrosis factor (ligand) superfamily, member 15 protein_id : NP_796345.2

name	Tnfsf8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678387 CCDS:CCDS18264.1 GeneID:21949 MGI:88328
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : tumor necrosis factor (ligand) superfamily, member 8 protein_id : NP_033429.1

name	Tnc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126722834 CCDS:CCDS18265.1 GeneID:21923 MGI:101922
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0001968 - fibronectin binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007528 - neuromuscular junction development [Evidence IMP] codon_start : 1 product : tenascin C protein_id : NP_035737.2

name	LOC667451 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252572 GeneID:667451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 23 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_031348.1

clone name	MSMg01-147B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094J05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-135I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056K22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-263E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232N19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-319L22.T7 (MSMg01no319_l22.b1)	MSMg01-319L22.TJ (MSMg01no319_l22.g1)
ACC	AG439176	AG439177
length	731	725
length of high quality (start - end)	239 (432 - 670)	347 (71 - 417)
definition	CHROMAT_FILE: MSMg01no319_l22.b1 PHD_FILE: MSMg01no319_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005	CHROMAT_FILE: MSMg01no319_l22.g1 PHD_FILE: MSMg01no319_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTC AGTCCTAATATTCCATATACAGTCCATCTTGGTCAACCAGGAACTGTATA AGTACCAGATTATAGATTACCCCATATGAAAAAGAAACTAAAATGCTATT GTTGGCTACTATAAAACTAGATATTTTTCCCTTCCTGAGTCTTAGTTTCT CTTTTTTATGATTGGGTAGGTGTCAGCTCAAGTGGGAGTTATTGTACTCC AGTAGGCTAAGTACGTCAGGAGTTCATTTTGGTAGTACGTATGTGTCAGC CACTGGCTCTCACCTGTCTCTGAGCCAAGTGATGATAGAGAGGCCACTGC AATTCAATCATGGGCTGATTCCCACATGTTTCTCCTTGAAGCACAATAAA GTCTTCCTCCTCCCCCACCCCCTCACGCTGNTCATTCACCGAATGGAAAC TTGTCCGTCACATCTATGAACAGTGTTCTGGGGATTCAGCATTTGGGTCT GCTCTGAAGCCTCTGCTTTTCAAGAGCTCAAGTTTCAGGAGAGCACAGGA GTGAATCACAGGCGAGGTAGAGGTGTCCAGTGACTTAAAGAGATGCAGTA AGACTGTCATGCAGATCAAAGAAGAGTAGCGTGTAGGCAGCCTCTGCCTG GACCTCCTGGTGCTTTTGTGGAATGGACAACCATATGCCTACAAATCAAG TTGCTTTTCACAGTTCACCAGCAACTGAAGC	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXACTTAGCTTGTCCAGAGCCGCTAAACACATGAA ATTCAAGAAGAACGAAGACCGAAGTGTGGACATTTTGCCCCTTCTTAGAA ATGGGAACAAAACACCCATTGAAGGAGTTAGAGAGACAAAATTTGGAGCT GTGACGAAAGGATGGGCCATCTAGTGATTGCCATATGCAGGGACCCATCC CATAATCAGCTCCCAAACGCTGACACCATTGCATACACTAGCAAGATTTT GCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCT AGCAAACACAGAAGTGGATGATCACAGCCAGCTATTGGATGGATCACACG GCCCCCAATGGAGGACCCCACCCCACCACTCAAGGAGCTAAAGGGAACTG CAACCCTATAGGTGGAACAACATTATGAACTAACCAATACCCCGGAGCTC TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTG CAAAGAGAGGCCCATTGGACTTGCAAACTGTATATGCCCCAGTACAGGGG AACCCCAGGGCCAAAATGGGGGAGTGGGTGGGTAGNGNATTNNNNNNTNN NNNNNNNNNNNNTTTTTTTTTTTNTNNTTNTTTTNNNTTTTNNNNTTTTN TCCTCCTTTTTTTTTTTTCTTTTCT
quality values	Open. Hide. 17 17 30 30 59 43 37 37 37 31 31 22 19 15 8 8 8 21 21 43 28 28 28 28 28 31 34 23 16 9 6 6 6 6 10 8 8 8 8 8 15 25 30 47 31 31 31 31 36 36 31 31 31 37 42 41 25 25 11 12 12 12 12 11 11 11 20 10 10 10 17 19 25 33 47 53 53 53 59 59 59 53 53 53 57 57 53 53 53 53 53 53 53 53 57 57 57 57 57 57 57 59 59 57 53 53 50 50 50 53 59 50 50 37 37 37 37 37 24 25 12 10 10 10 17 21 34 37 37 50 59 59 59 59 53 57 57 57 57 57 53 43 43 47 47 47 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 44 38 23 18 17 20 20 27 32 43 44 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 41 26 15 12 12 12 23 24 30 44 34 46 36 36 25 19 19 17 17 17 20 24 32 37 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 53 50 50 50 50 59 34 27 8 10 6 6 6 6 7 8 6 6 6 8 8 10 8 18 3 0 3 22 23 39 39 39 39 39 48 48 48 53 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 53 57 57 57 57 57 59 59 59 59 59 68 68 68 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 48 48 42 42 39 44 44 53 57 59 59 57 57 57 48 43 43 40 40 40 41 41 39 39 44 41 41 44 41 41 41 47 41 40 47 48 48 50 39 39 36 43 43 43 47 48 59 59 48 48 37 47 35 39 37 39 39 36 28 24 20 25 25 31 31 34 34 37 37 37 37 39 35 32 31 37 37 37 31 29 37 43 43 41 37 29 37 26 26 25 24 29 38 39 39 32 32 22 25 25 31 31 32 31 28 14 14 22 25 26 10 9 9 9 9 16 12 22 23 20 20 30 37 39 38 31 31 18 18 18 12 19 10 11 11 18 23 35 28 31 39 39 34 37 34 32 20 20 12 18 21 18 16 17 30 19 24 23 28 34 34 28 25 21 22 11 11 11 11	Open. Hide. 10 10 9 9 17 12 10 10 11 25 25 59 46 41 43 43 43 53 53 50 50 59 59 59 34 27 16 9 9 6 7 8 9 9 8 8 6 7 6 7 8 3 0 3 8 8 26 26 47 50 50 50 47 43 28 19 15 9 9 7 7 7 7 7 7 9 9 10 10 12 18 12 29 31 59 59 59 36 36 36 36 38 38 57 57 57 57 57 57 57 53 57 57 53 53 47 47 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 68 68 50 48 42 46 46 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 68 68 68 68 68 68 59 59 54 54 48 48 48 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 53 53 53 53 53 53 53 53 50 50 43 41 28 15 15 9 15 11 11 11 17 15 27 23 46 59 41 50 50 53 53 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 48 46 43 43 37 37 43 37 37 34 34 28 28 19 19 11 12 12 25 25 43 47 47 59 59 48 53 53 57 57 57 57 57 57 57 59 59 57 57 59 59 59 53 59 59 59 59 50 42 41 25 15 8 6 8 6 7 6 6 6 6 10 8 8 8 8 16 10 20 28 41 37 39 44 44 53 53 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 41 41 41 41 34 36 39 39 39 39 42 41 37 37 37 32 31 37 43 47 47 47 59 59 59 59 59 47 59 47 47 37 37 37 32 32 37 44 39 39 37 37 39 39 59 59 59 59 59 59 59 59 59 59 48 48 57 57 59 59 59 59 59 46 46 41 46 41 41 43 43 37 37 28 22 22 22 28 31 41 41 41 41 41 36 31 31 31 39 18 9 9 9 9 19 23 30 30 24 28 28 37 39 37 34 34 23 23 3 0 3 0 3 23 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 13 15 14 22 19 19 23 18 15 3 0 3 0 0 3 3 0 3 8 9 3 0 0 0 3 13 17 3 0 0 0 0 3 8 8 3 0 3 7 6 6 6 6 6 8 10 8 8 8 10 8 9 10 9 11 11 11 12 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no319_l22.b1 MSMg01no319_l22.b1 CHROMAT_FILE:
MSMg01no319_l22.b1 PHD_FILE: MSMg01no319_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:08 2005
         (239 letters)



>mm_chr4_63425390_63426031
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 237/242 (97%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattcaccgaatggaaacttgtccgtca---catctatgaacagtgttctggggattca 57
           |||||||||||||||||||||||||||||   |||||||||| |||||||||||||| ||
Sbjct: 442 tcattcaccgaatggaaacttgtccgtcacatcatctatgaaaagtgttctggggatcca 383

                                                                       
Query: 58  gcatttgggtctgctctgaagcctctgcttttcaagagctcaagtttcaggagagcacag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcatttgggtctgctctgaagcctctgcttttcaagagctcaagtttcaggagagcacag 323

                                                                       
Query: 118 gagtgaatcacaggcgaggtagaggtgtccagtgacttaaagagatgcagtaagactgtc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagtgaatcacaggcgaggtagaggtgtccagtgacttaaagagatgcagtaagactgtc 263

                                                                       
Query: 178 atgcagatcaaagaagagtagcgtgtaggcagcctctgcctggacctcctggtgcttttg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgcagatcaaagaagagtagcgtgtaggcagcctctgcctggacctcctggtgcttttg 203

             
Query: 238 tg 239
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 642
Length adjustment: 9
Effective length of query: 230
Effective length of database: 633
Effective search space:   145590
Effective search space used:   145590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information