Query= MSMg01no319_o20.b1 MSMg01no319_o20.b1 CHROMAT_FILE:
MSMg01no319_o20.b1 PHD_FILE: MSMg01no319_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:20 2005
(608 letters)
>mm_chr4_48256497_48257505
Length = 1009
Score = 1094 bits (566), Expect = 0.0
Identities = 598/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 1 aaaactaagctcagtgactctaaccaacattcatctcagacagggcctggaggacctgcc 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 201 aaaactaagctcagtgactctaaccagcattcatctcagacagagcctggaggacctgcc 260
Query: 61 tggacagcc-tcgtactgctttcactgtctgtgataatgatgtgttatgtgtcagctacc 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggacagccctcgtactgctttcactgtctgtgataatgatgtgttatgtgtcagctacc 320
Query: 120 ccaagaaaaataatgttttcactttctctttaatgtggaaatccaagttctagcttgtca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagaaaaataatgttttcactttctctttaatgtggaaatccaagttctagcttgtca 380
Query: 180 aagagaatctaacctaacaactgcaatgcagagataagatcaaattttaaaccaaagtag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaatctaacctaacaactgcaatgcagagataagatcaaattttaaaccaaagtag 440
Query: 240 cttagttttactcagcttagtaagtaatatttattcttaagttccatctttacctcacgg 299
| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 441 caaagttttactcagtttagtaagtaatatttattcttaagttccatctttaccttaatg 500
Query: 300 catctactgcccaggggatcttttgttcaaagcagaatttacacatgaaaacccatccac 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctactgcccaggggatcttttgttcaaagcagaatttacacatgaaaacccatccac 560
Query: 360 tgaatcactgctttacagtaagtgaacactaacgtcagagtttagtcaaatactaaatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatcactgctttacagtaagtgaacactaacgtcagagtttagtcaaatactaaatac 620
Query: 420 tgccagatactccattggacgctactacatgaacacttatttcttataacatgacatttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccagatactccattggacgctactacatgaacacttatttcttataacatgacatttc 680
Query: 480 aaagtttagtaactcaccaataactcaactttagacagattgatagacagacagacaggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagtttagtaactcaccaataactcaactttagacagattgatagacagacagacaggc 740
Query: 540 aggcagcaggcatgctgatgctatggaatacctgtttaanaacactgtactaggacatac 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 aggcagcaggcatgctgatgctatggaatacctgtttaaaaacactgtactaggacatac 800
Query: 600 gcaacagat 608
|||||||||
Sbjct: 801 gcaacagat 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_o20.g1 MSMg01no319_o20.g1 CHROMAT_FILE:
MSMg01no319_o20.g1 PHD_FILE: MSMg01no319_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:20 2005
(343 letters)
>mm_chr4_48413725_48414466
Length = 742
Score = 594 bits (307), Expect = e-174
Identities = 334/343 (97%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 1 ttttcagttatatattgagtctctaccaaaatcagctatatgctggatcataaagaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttttcagttatatattgagtctctaccaaaatcagctatatgctggatcataaagaaagt 524
Query: 61 ctcagaagaacaatatccttccctggaaagatgcctctattgtaacttctcgaatccctg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 523 ctcagaagaacaatatccttccctggaaagatgtctctattgtaacttctcgaatccctg 464
Query: 121 acttgtgatgctacacggaaaagcagctgtcctgaaacggagaggccatcctggattatt 180
|||||||| |||||||||||||||||||||||||||| || ||| |||| ||||||||||
Sbjct: 463 acttgtgaagctacacggaaaagcagctgtcctgaaatggggagaccattctggattatt 404
Query: 181 gtgtgggtctttccaagggaaaaagggctggggagctggtgtcagtgactcagccagcac 240
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 gtgtgggtatttccaagggaaaaagggctggggagccggtgtcagtgactcagccagcac 344
Query: 241 cggccagctctgacaatggaggagggccatgagtcaagcaccctctaaatgctggaaacg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 343 cggccagctctgacaatggaggagggccatgagtcaa-caccctctaaatgctggaaacg 285
Query: 301 ttaaaaaacaaagctaaatgaaacaaacaaacaaacaaacaaa 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttaaaaaacaaagctaaatgaaacaaacaaacaaacaaacaaa 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space: 244822
Effective search space used: 244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
