BAC Information

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BAC

Clone NameMSMg01-320B15
Chromosome4 (Build37)
Map Location 90,980,825 - 90,981,110
singlet/doubletsinglet
Overlap geneElavl2
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneLOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320B15.T7 (MSMg01no320_b15.b1)MSMg01-320B15.TJ (MSMg01no320_b15.g1)
ACCAG439429AG439430
length727726
length of high quality
(start - end)
292 (65 - 356)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no320_b15.b1 PHD_FILE: MSMg01no320_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005CHROMAT_FILE: MSMg01no320_b15.g1 PHD_FILE: MSMg01no320_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCACTACACCCACCTGGTCCTGGGTTGGTTTTATTTATTTATTTA
TTTATTTATTTATTTATCCACTTATTTATTTATTTATTATTTGATAGGGA
GACTTTTAAGACTGCTTCTATTTGTTTAGGGGGTATGGGACTGTTTAGAT
GGTTTAGCTGCTTCTGATTTAACTTTGGAACTTAGTACCTGTCTAGAAGA
TCATCCTTTTCATCTAGATTTTCCAATTTAGTTGAGTATAGGGTATTGTA
GTAGAATCTGATTTTTTTTTCTTCAGCTTCTGTTGTTATGTCTCCCTGAG
TTTTTGTTCTTAGCTATTCTGACCAGTGTTAGATAGAATCTCAGGGTCAT
TTTATTTGCATTTCCCTAATGACTATGGACTTTGAACATCTCAAGTGCTT
CTCGGGCATTCAAAATTATTCTGTTGTGAATTCTCTGTTTAGTTCTTTAC
CCATTTTTTTTTATTGGGTTGTTTGGGTTTTTCAAGGTTAATTTTCTTGA
GTCCCTTTGGAATATTAAACCCTCCTTTTTGGATTGGTAAAGGGGTTGGG
GAAAAAAGATTTTTTTAAACCCCGGGAAATTGGGCCGAATTTGCCCCCTT
TGGAACAGGGGGCCCTTTTTGCCCTTTAAAAAAAACATTTGTTTCAGTGT
GTTATTATAAGGCCCCCCCTTTATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTGTTAAATTCACCTGGTGTCATG
AATGAGCTAGGAGAGCGGATTCCTAAGCTTCAATTCCATCAGATAGAGAG
AGCAGACCTATCCAAGTCAGAGCCATAGCAGTGTGACGAGATGATCATTC
ATTCCAAGGCTCCTACCAAGGCTGGTTCAGTCTGCCCAACATTCTACTCC
TCTGCTGTGTGTGCCACCCTCATACCAGTTCCCAGGCTGGCAATCTGGCT
CAGTGGTACCACACTGGTCTATCATGACTTAAGCCTGGGAGTATGAAAAC
TACCACTGTANTTAGTGTCCGCGGACATTACCCAAAAGTGATATGAACTC
TCAGACTTATAGCCTCTCCAATGGAAAAAAAACATCTCAAGTCGGATGAA
CTTTTCCAGGGAGCTTTTCCTAAACCATCAACAGCCACCTGTGACCTATC
AGATCAAACACAAGGTACACTACAGACACTGAGCACCCTGCATCTTTTAT
TATTACCAGCTTTGGCATCTGAGCCTTCTTTGTCCCTCAAACAAGCCCAG
TGCCTTACTCTCTTGCTTTGCTGATGGTCTCCCTTTGAAAGATCTGTACC
AGGGAACAAGAGCAGTTTCTTCAGAGTTTAGGGATTTTGAAGGGTGAATC
ACACTATCTTTAATATATGTAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_b15.g1 MSMg01no320_b15.g1 CHROMAT_FILE:
MSMg01no320_b15.g1 PHD_FILE: MSMg01no320_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:32 2005
         (285 letters)



>mm_chr4_90980625_90981311
          Length = 687

 Score =  511 bits (264), Expect = e-149
 Identities = 280/286 (97%), Gaps = 2/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgttaaattcacctggtgtcatgaatgagctaggagagcggattcctaagcttcaat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtcaaattcacctggtgtcatgaatgagctaggagagcggattcctaagcttcaat 260

                                                                       
Query: 61  tccatcagatagagagag--cagacctatccaagtcagagccatagcagtgtgacgagat 118
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatcagatagagagagagcagacctatccaagtcagagccatagcagtgtgacgagat 320

                                                                       
Query: 119 gatcattcattccaaggctcctaccaaggctggttcagtctgcccaacattctactcctc 178
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 321 gatcattcattccaaggctcctaccaaggctggctcagtgtgcccaacattctactcctc 380

                                                                       
Query: 179 tgctgtgtgtgccaccctcataccagttcccaggctggcaatctggctcagtggtaccac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgtgtgtgccaccctcataccagttcccaggctggcaatctggctcagtggtaccac 440

                                                         
Query: 239 actggtctatcatgacttaagcctgggagtatgaaaactaccactg 284
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 actggtctatcatgacttaagcctgagagtatgaaaactaccactg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 687
Length adjustment: 9
Effective length of query: 276
Effective length of database: 678
Effective search space:   187128
Effective search space used:   187128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)