BAC Information

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BAC

Clone NameMSMg01-320C09
Chromosome4 (Build37)
Map Location 14,632,456 - 14,632,569
singlet/doubletsinglet
Overlap gene1700034K16Rik
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
Downstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320C09.T7 (MSMg01no320_c09.b1)MSMg01-320C09.TJ (MSMg01no320_c09.g1)
ACCAG439462AG439463
length850836
length of high quality
(start - end)
114 (133 - 246)---
definitionCHROMAT_FILE: MSMg01no320_c09.b1 PHD_FILE: MSMg01no320_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:36 2005CHROMAT_FILE: MSMg01no320_c09.g1 PHD_FILE: MSMg01no320_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGG
AATTCTACCAGCATATTGCCTCCTGCCACCTTTTCTCTGTTTCTGAGGAG
CAGTTTGTAATTCAAGTTAATTTTGCTTCGTTTTAGAGGTATGCTATTAG
CTAATTAGACAAATTGGGTGGTTAGCTCTAATATACAGAAAACTCATAGA
CAAGGACTCATTTTTCAAATATAAACAGAAGAATTTTATGGAACACTACA
GTATCCCTATTAAATGGTTCCATTACCGATTGCTTTTACCATTTTATGAC
TTCTGGACTCAACGTNTGAAATTTCATTCTCCCTCCACAAATATTTTGGT
GGGCCCTAAAATAAATTTTCCCCTTGAGAAAAAAAAAAATTTTTTTTTTT
TTTGCCAACCCCACCCCCCCCCCCCCGCTGAAAAAAATAAGATTTTTTTT
CGNCCTTGCTAGGGGGGGTGGTGGGGGNNNCTCCTCCCTTCCTTCTATCT
TTTCCCATTCCCCTATTCTCCCCTTCACTTTCATTCCAATGAATAGTTCC
ACACCATCTTTCTCTTTTTATCCACCATACTTTTATGTTTATTTTGTTTA
TAATTAATTCCACAATTTNCTTTTTTTTTTATACAATATATATCATACTC
TATTACCTTTCCCGATTTACCTTTTATAAAACATCTATATCTCTTTACTC
CAATATAATTTTCCCAATTTATTCCCTCGCCCTCACACATCGAGTTACAG
TTACATTCCACCACTACCGGAAACGCCATTCTTATTTATCCTCCTCTCAA
CACTATATCTTTTCTTCGTCCCACTTGCTCTTCTTCTAATAGGTAATAGT

TTATCTATCTTCTCATTAATTACTCCTATACCAACCAAACAAACAACACA
AAAAACCCGAAGATTAACCCCAATATAATAACCTTTTGGTCTTTNTTNTC
CTTGAATTATACTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGTCTCCCCGGAAAATCCCTTTTTCTT
AAAATCCCTGCTTCACCACGGGTAATTCAGGGCCCTTTGGGAAAAATTAA
GGCCCCCCTATTAAATCAGAAAAAAATTGGCCTCTCCCTATCCTTACAAG
CTCCTGGAAAATGTGGTCTCAACCGATACCTCCTTTTTTTTCTACCACAA
GGGGGTGGCGTCCCACCCACCAAAAAAAAAATAAAAATGGTCACCACATA
TTAAACATTTCTTTTGGGGACCCTCCCCTCCCCTCCCCTTTCCCTCAAAC
TATTATTTTTTCCCTCTCCCCGCGTCTCACCTATTTCTGAGATACACTAA
AAATGCGTGGCGCAATCTAATATTATTCTATAAACCATTTCTACCCCCCT
TTACTCACCCAATTTCTTTCCACTTTCTTCCCCGTTATAAACACCCTCCT
TACCTACCTTCAATTACCAGTTGTGTTTGTTTTCCTTCGTTCCTCTTTTT
ATACCCTCGATATCTACATACTTTGTTTTAAAAAATCTTTATCTTATTCT
CCTACGCACTCAGAACAGGAAGAATTCAGTCTTTTTTTTCTTTTTTATAT
AACTCATACGCAACGCCCCCCTCCCCCACTTTCATTTGTCCACCCGTCAT
TTGAGCCGTACACTTTTTAAGAATATAAATATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_c09.b1 MSMg01no320_c09.b1 CHROMAT_FILE:
MSMg01no320_c09.b1 PHD_FILE: MSMg01no320_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:36 2005
         (114 letters)



>mm_chr4_14632256_14632769
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaggtatgctattagctaattagacaaattgggtggttagctctaatatacagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttagaggtatgctattagctaattagacaaattgggtggttagttctaatatacagaaaa 260

                                                                 
Query: 61  ctcatagacaaggactcatttttcaaatataaacagaagaattttatggaacac 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatagacaaggactcatttttcaaatataaacagaagaattttatggaacac 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)