BAC Information

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BAC

Clone NameMSMg01-320G07
Chromosome4 (Build37)
Map Location 43,198,562 - 43,198,739
singlet/doubletsinglet
Overlap geneUnc13b
Upstream geneLOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Downstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G07.T7 (MSMg01no320_g07.b1)MSMg01-320G07.TJ (MSMg01no320_g07.g1)
ACCAG439640AG439641
length798808
length of high quality
(start - end)
178 (181 - 358)109 (174 - 282)
definitionCHROMAT_FILE: MSMg01no320_g07.b1 PHD_FILE: MSMg01no320_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:53 2005CHROMAT_FILE: MSMg01no320_g07.g1 PHD_FILE: MSMg01no320_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTCCTTTTTATAAGCAAAACACGACAGAATCCCCCTTCCACANANCT
ACTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAGAACGCG
GAATTCTACTATAATGTCTAATAAACTCCCTGNAAAAGGGAAACTCAGAG
TGACAATAAGAAGAATGTGTTGGTTCTAGTACAATTGGTTATGACTTTAA
AGAGATGATTGATCAAAATATACCCCTCCCAATAAAACCAATTAAAAATC
ATTCAAAAAGTGAAACTTGCAGTTGTCTGGAGAAAGGGCATGGTTTATCC
TAAATTAAGGGCAATCACCATTTAATTGAACAGGAAAACCATAGTGTAGT
GTCCTTAACACAGAGAGACGGCTGTTTTTTAGGAGAATATGAACCAGAGC
TTAAAAGTGTCAGTTTATGTTTTTGATGACCCCCGCCGACAGAGTAGTTG
AGATTGTAAGACAGAATGCATGCCCAACCAAAAAAATAAACAAATATATT
ACCAAAGTTCAGTCTGAGTCGCCCCTTTACCTTCTGCTGAAGACACTTAA
TTTTTGCTAGATTGTTATTCATCATGGGGGGTTCTTTATGAAGCATAAAA
TCGAATATAGATATCTCTTGTACTTTCCTCTTTCATATAAAAGGTGGAAT
AGTGATTGCCCCTCTTAAAGGAAATGTGAACCCTTGTGTGTGAGGTTGGA
ATGAAGGGCAATTGATGACTGAAGCTAAACACAAATTCATTTCATAGCAT
CCCCGGTAAACTTGTAATCTAGAACAGTTAATAATATAAAGGGGGAAA
AAATTATTTTNNCAAAACAAAACTCTTATTACACTCCTTTNTNCNNNCCC
GATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCTCCGAAAATCTCCCATGGGTTGAGAGACCCACTGAGTTCA
GTCCATGGCATATTTGACTTATTTGCTGATCCCTGTTTTAGTGGCTGGAA
GCTGTGCTTCTCTGTATTACAGCTTGAATTGCTGTACTGGCTAGTTTTGT
GTCAACTTGACACAGCTGGAGTTATCACACATAGAAAGGAGCTTCATTTG
AGGAAATGCCTCCATGAGATCCAAATGTAAGCCATTTTCTCAATTAGCGA
TCAAGGGGGAAAGGCTCCTTGTGCGTGGTACCATCTCTGGGCTGGTAATC
TTGGTTCTATTTTTTATCACCCCGCCCCCGCCAGGGGAATCAAGCCAGTA
AAGAACATCCCTTCATGGCTTCTGAAAAAAAATACTGCTTCCTGATCTGC
TTGAGCCTCAGTCCTGACCTTCCTTTGGTGTTGATCTTAACTATGGAAGT
GAATTCCCAATATTTCTTCTCCTCCTCCACTTGTTCCTTGGTCATGTATG
TTTGTGTAGGATTTGATTTCCTGATTAATNATATTTGCCCTTCTTCTTGA
TCTTATGTATACTACGTCTCCTTTATAATCCGTCTACATACGCGTTAGTT
TTTCGTCAAGACATGTTATTAAAAAGTTTTCCACACTTTCCCCCACCACC
TTACTAGAAACCACCATTTTTAACGCACTTGCCCATTTATAATAGAACAT
CATATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g07.b1 MSMg01no320_g07.b1 CHROMAT_FILE:
MSMg01no320_g07.b1 PHD_FILE: MSMg01no320_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:53 2005
         (178 letters)



>mm_chr4_43198362_43198939
          Length = 578

 Score =  329 bits (170), Expect = 7e-95
 Identities = 176/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaattggttatgactttaaagagatgattgatcaaaatatacccctcccaataaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaattggttatgactttaaagagatgattgatcaaaatatacccctcccaataaaacca 260

                                                                       
Query: 61  attaaaaatcattcaaaaagtgaaacttgcagttgtctggagaaagggcatggtttatcc 120
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 attaaaaatcatccaaaaagtgaaacttgcagttgtctggagaaagggtatggtttatcc 320

                                                                     
Query: 121 taaattaagggcaatcaccatttaattgaacaggaaaaccatagtgtagtgtccttaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattaagggcaatcaccatttaattgaacaggaaaaccatagtgtagtgtccttaa 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)