BAC Information

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BAC

Clone NameMSMg01-320O19
Chromosome4 (Build37)
Map Location 131,079,228 - 131,079,421
singlet/doubletsinglet
Overlap geneEG664832
Upstream gene2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831
Downstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320O19.T7 (MSMg01no320_o19.b1)MSMg01-320O19.TJ (MSMg01no320_o19.g1)
ACCAG440035AG440036
length716655
length of high quality
(start - end)
125 (124 - 248)194 (65 - 258)
definitionCHROMAT_FILE: MSMg01no320_o19.b1 PHD_FILE: MSMg01no320_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:33 2005CHROMAT_FILE: MSMg01no320_o19.g1 PHD_FILE: MSMg01no320_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTAGCGCGGAT
TCTTTGTTTATGCTAGAAAAAATTTTTTAGTGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTTAGTTCTCTATATATATTGGATATTAGTTCCTTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCTTTCTCC
TCCTTTTAAAGAGCAGATTACTAAGAGATAACAACCAAACATGACAAAAT
GAAATATAAGATGAAGCAAAAACTTTCATATTAGAGTTGGACACGGAAAC
CCAGTAGGAGGGAAAGATTTTTTTGGACAGGCAGAGCAGTCAGAGACCCC
CATAAAATTTTTTTTTCTTACCTGCACTATCTACACAGAGGCTGCTGTCT
TGTAGAGTCCAGGGCCACCAATCCAGGGATGGCCCCACCCACAATGGGCT
GGGTTCCCCCCATCAATCACAAGTAATAAAATGTACGACAGGTCTGTCTA
CTAACCAATCTTATGGAGGAATTTTCCTAGTGGGGACTTGCTCCTCACAG
ATGACTGTGACTTTAGCTTGTGTCAAGGTGACATAGAGCCATCCAGCATA
CTGCCATATGGTGCTGGATGGATAGAGACGTGCTAGGACTCTCCTTCTCT
TTCTCACTTAGGGCTACAATCTGTCAACTCAGCCCCATGGATCCCAGTTT
CTGTATTTCCTCCATC
TTCCCCGAAATTCTGCTCTCTATCATTCTGGGCCTCCTGATCTCCCTACC
AGAGTTTTTCCCCGCTCTGAGCAATTACTAGGTCAGGAAGGTAGAAAGGG
GGTTTCTACTAGGGAAGGCAGGTCTCAGATCTGCCCTGACCTGGTCTCCA
AGGAGGAGATCCTTGATTTGGGTGCTGTCAGGCTGCTGGTTCATGCTCAC
CTTGTGTTCTGAGCACCATAGCTGTATAAACAAGCTTCCTTCTGCCTTTC
TTTGAGGATTCTCTGGTCATATGCGGAGGCAGAGGAAGCCAGGAACACTT
TTTTCTCTTTGCTCTGCGCCACCAGGTCTATCCCTGGGGTATTAGTTGTA
CCCATTTTGGTATCTTGAGAGACAGCTGAGACTGACGTGATTAACCCCGT
TTTGTAGGTGAAGAACAATATATATTGGTTTAAAAGTCAAAGCCTCCATC
AGTACTGAGCCACAGGAGGGCTTTTTAGTTCCCATGAATCATTTCAACCA
TAGCCCTAACTGTTCTTCTTCTCAAACTCCTATTCCTTCGAAGGCCCTTC
CCTGACGTCAGAGAACCTTTTGCTTTGCACAGAAGACTCTGGGTGCATAC
GGGATGACCGAAGTAATAGTTCCCTCGATGTGCCGTGACTTCTAGTTCTC
ATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_o19.g1 MSMg01no320_o19.g1 CHROMAT_FILE:
MSMg01no320_o19.g1 PHD_FILE: MSMg01no320_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:33 2005
         (194 letters)



>mm_chr4_131079028_131079621
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgagcaattactaggtcaggaaggtagaaagggggtttctactagggaaggcaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgagcaattactaggtcaggaaggtagaaagggggtttctactagggaaggcaggtc 260

                                                                       
Query: 61  tcagatctgccctgacctggtctccaaggaggagatccttgatttgggtgctgtcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatctgccctgacctggtctccaaggaggagatccttgatttgggtgctgtcaggct 320

                                                                       
Query: 121 gctggttcatgctcaccttgtgttctgagcaccatagctgtataaacaagcttccttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggttcatgctcaccttgtgttctgagcaccatagctgtataaacaagcttccttctg 380

                         
Query: 181 cctttctttgagga 194
           ||||||||||||||
Sbjct: 381 cctttctttgagga 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)