BAC Information

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BAC

Clone NameMSMg01-321A14
Chromosome4 (Build37)
Map Location 44,868,428 - 45,049,934
singlet/doubletdoublet
Overlap geneZcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10
Upstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream gene1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A14.T7 (MSMg01no321_a14.b1)MSMg01-321A14.TJ (MSMg01no321_a14.g1)
ACCAG440115AG440116
length729729
length of high quality
(start - end)		317 (45 - 361)652 (75 - 726)
definitionCHROMAT_FILE: MSMg01no321_a14.b1 PHD_FILE: MSMg01no321_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005CHROMAT_FILE: MSMg01no321_a14.g1 PHD_FILE: MSMg01no321_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(45,049,696 - 45,049,934)(44,868,428 - 44,869,079)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGCCTCTCGTATATATATAGAGAGAGGCCACAGAGGAAATGAATA
CACACACACACACACTCACCCCCACACACAGTCTATTAAGTTCTGTTCTT
CTAGAGAACCTGAATACACTAAGTCGTTCTAGTCTAGTCAAGCTGACAAT
GAAGGAGTATCACAATCTCTTTTCTACTTTCATGACATCATCCTCAATAC
ACACAGATACACTTTTAATCTGAATCTAGACTCTGCAAAAAAGATGTGCC
GAGTCTGCACTTAATCACCTTCCTGCACTCAGTGATTCTCTCCAGTTCCA
TCCATTTTCTATTAGTGCCCGCCCTGACTCATGTGTTGACAGATGTCAAG
GCTGGTTGTCCCCCCCGCCTGTTGATCTCAGTGTGGCAGGGAGCACGGGT
GTGTGAATGTGCCTGTGGGGTAGCCAGGAGTGCTGTGGCGGTTATTTTAT
GCATATGCATGAGTGCTTACACGTACATCATGTGTGTGTCTGGTGCCTGC
AGAGGTTAGAAGAGTGGTTGGGTTCCCTGGAAGTCAGTTGCTCTTTCTTT
TTGTTGTTTTTGTTTGTTTTATTCAGACGGGTTTTTCCTGTGTAGCCCTG
GTTATCCTGGAACTCAGTAGACCAGGCTAGGCAGAGTGTTGGATTATAAG
CTTTCGTCACCACGCCCTGATGCATTCTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAGTATCGAACAGAGCCCCTC
ATTTTATCTTGAGCAGAGCCCCTCATTTTATCTTGAACAGAGCCCCTCAT
TTTATCTTGAGTAGACCCTGCAGATTATTATTTAGTTCTGATAAAGGCCA
CAAAATCTTTTCATTTTGGACAAATCTGTCAATATCCTTTGTCCTCATTC
CTGTCTCAGTAAGGTAGTAACCTTTTCCATAGTGATAATTCGAGGACTTG
GTCATCTTTACAGTATTTTTTCTTTTAGCCCCCTCCTCTCCCTGTTAAGG
ACTACAAGAAAGGACAGTAAAACAGCCAAAAATATTGGGGTTTATTAGCT
ATTTATAAAAGCCCACCATATGCCTACCTACTTCTAGAAGTACTTCATAC
ATGAAATTAAAATATGTTAAATCCTTCAAAAAATTAAACAGTGGTTCAAA
TAATAAGTGATACTGATCAAATAACAATCACTGTTAATGCCTTGTAACTG
GCATAGAGCAGTCCTGCAGATATGCTTATATTTGCCAACATTAGTCCTTT
GTAACTGATTACTTTGGGGAAAGTGTAAGTAGCTGAATAGGTGTTGACAG
ACAAGCATGATAACACCCTATTTTTGGAGTCCATTCATTTACGTGGTTTT
AGCACTTTGTCTTAATTCGTTTTATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a14.b1 MSMg01no321_a14.b1 CHROMAT_FILE:
MSMg01no321_a14.b1 PHD_FILE: MSMg01no321_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
         (317 letters)



>mm_chr4_45049410_45050126
          Length = 717

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  cacacacagtctattaagttctgttcttctagagaacctgaatacactaagtcgttctag 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacacacagtctattaagttctgttcttctagagaacctgaatacactaagtcgttctag 466

                                                                       
Query: 139 tctagtcaagctgacaatgaaggagtatcacaatctcttttctactttcatgacatcatc 198
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 465 tctagtcaagctgacaatgaaggagtatcacagtctcttttctactttcatgacatcatc 406

                                                                       
Query: 199 ctcaatacacacagatacacttttaatctgaatctagactctgcaaaaaagatgtgccga 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcaatacacacagatacacttttaatctgaatctagactctgcaaaaaagatgtgccga 346

                                                                      
Query: 259 gtctgcacttaatcaccttcctgcactcagtgattctctccagttccatccattttcta 317
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtctgcacttaatcaccttcctgcactcagtgattctctccagttccatccattttcta 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no321_a14.g1 MSMg01no321_a14.g1 CHROMAT_FILE:
MSMg01no321_a14.g1 PHD_FILE: MSMg01no321_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
         (652 letters)



>mm_chr4_44868228_44869279
          Length = 1052

 Score = 1176 bits (608), Expect = 0.0
 Identities = 641/652 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaagtatcgaacagagcccctcattttatcttgagcagagcccctcattttatctt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaaagtatcgaacagagctcctcattttatcttgagcagagcccctcattttatctt 260

                                                                       
Query: 61  gaacagagcccctcattttatcttgagtagaccctgcagattattatttagttctgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacagagcccctcattttatcttgagtagaccctgcagattattatttagttctgataa 320

                                                                       
Query: 121 aggccacaaaatcttttcattttggacaaatctgtcaatatcctttgtcctcattcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggccacaaaatcttttcattttggacaaatctgtcaatatcctttgtcctcattcctgt 380

                                                                       
Query: 181 ctcagtaaggtagtaaccttttccatagtgataattcgaggacttggtcatctttacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagtaaggtagtaaccttttccatagtgataattcgaggacttggtcatctttacagt 440

                                                                       
Query: 241 attttttcttttagccccctcctctccctgttaaggactacaagaaaggacagtaaaaca 300
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctttcttttagccccctcctctccctgttaaggactacaagaaaggacagtaaaaca 500

                                                                       
Query: 301 gccaaaaatattggggtttattagctatttataaaagcccaccatatgcctacctacttc 360
           ||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||
Sbjct: 501 gccaaaaatattggggtttattagctatttataaaagcataaaatatgcctacctacttc 560

                                                                       
Query: 361 tagaagtacttcatacatgaaattaaaatatgttaaatccttcaaaaaattaaacagtgg 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaagtactccatacatgaaattaaaatatgttaaatccttcaaaaaattaaacagtgg 620

                                                                       
Query: 421 ttcaaataataagtgatactgatcaaataacaatcactgttaatgccttgtaactggcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaaataataagtgatactgatcaaataacaatcactgttaatgccttgtaactggcat 680

                                                                       
Query: 481 agagcagtcctgcagatatgcttatatttgccaacattagtcctttgtaactgattactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagcagtcctgcagatatgcttatatttgccaacattagtcctttgtaactgattactt 740

                                                                       
Query: 541 tggggaaagtgtaagtagctgaataggtgttgacagacaagcatgataacaccctatttt 600
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 741 tggggaaagtgtaagtagctgaataggtgttgatagataagcatgataacaccctatttt 800

                                                               
Query: 601 tggagtccattcatttacgtggttttagcactttgtcttaattcgttttatt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggagtccattcatttacgtggttttagcactttgtcttaattcgttttatt 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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