BAC Information

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BAC

Clone NameMSMg01-321G05
Chromosome4 (Build37)
Map Location 104,720,429 - 104,720,768
singlet/doubletsinglet
Overlap genePrkaa2
Upstream geneDab1, C8b, C8a, 1700024P16Rik
Downstream geneLOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G05.T7 (MSMg01no321_g05.b1)MSMg01-321G05.TJ (MSMg01no321_g05.g1)
ACCAG440370AG440371
length734734
length of high quality
(start - end)
284 (74 - 357)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no321_g05.b1 PHD_FILE: MSMg01no321_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:07 2005CHROMAT_FILE: MSMg01no321_g05.g1 PHD_FILE: MSMg01no321_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTCAGTTTTTCCTCCCAGCCATGGTTGTTATATGGGAGCCATAGATT
ATCCCATATGGAAAGGTAGCCTCCGCTGACCATGTAGGTAGATCCCCAGA
GGAGCCTCCAGCTAGTGCTGCCTAAAGCAGGGGTCAGACTATACTGCTGA
GCCCGACCAAACTGAAGCTTTATGAGCAAAATAAATGGTTGGTCTTGTCT
TAAACCATGATGCTGTGGCTTGGTCAGCTCTACCATAGTAAATAATGAAA
GGAGTGGCCATCCTAAAACCTGTGGAGCCTGTTCTGCACAGCAAGGTCGT
TGTACTGATTTTCTTTTTTACACCCCCCGCTCGACCATTATACTGTCATC
AAGCCCTATGTTTATCCCCCCCTCTCTTGAACACAGTAAGAAACTGAGGC
TCAGAAAGGATATATTCTGCACGGGGCCAGTGTACTGGTCTTGATCCAAA
TTCATTCTGGTTATACACATCTCCTCCTAGCTCTTCTGTTTACACTACAG
GTAGTGTGGTACACTCGTTCCTTTCCCTTTCCTCATCTCCCCAGTAACCT
GTGTCTATCCCGATCCCCACAGTTTTATTCCATTTTTGTTGCCCCGTTTT
CTTCTCATTGATACGCGCTTGCCACGAATCGCATCTGATATCTTTCCCCC
ATCTTTCCTATTCTTTGTCATGACTCCGCTTTGG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTCATACAAGGGCTGGAGAGATGGCT
CCATGGTTAAGAGCACTTGCTCAGAGAACCCAGGTTCGATTCCCAGTACC
TACTGGAGGGCTCCCAACTCCCAGGGAATCTGACACTATCTTCTGACCTC
TCTGGGAATCAGACTTACAAGACATAGATGCAGTCTAAAGACTCATACTT
TTAAGATAAAAATTTAAAAATAAATAAGTAATGTTTTAGAAAAGATACAA
ATTAAACATTGTCTATATGGTACTATTAAAGCACTTTAGTTAATTTCAAG
TTTTGTTTAAAATGTGTGCTAAAGTGCAAAATTTCTGTCACATAATCATT
TTCTTTCTTGTAGCCACCCCGGGAGTGTGAAGCACTATATATTATTTTTT
TCTTTTAGTTTGTGCTTATCTACTTTGTTTCCTTAAAGAAATAATAGAGA
AAGTGTGAATGTGATTGTTTGCTTGTTAGCTGGTTTGTTTCTGAGACAGG
GGCTTAGCACGTTACCCTGGATGGCTTGGCGCTGTCTAGATCAGGCTTGC
CTAAAACTCAGAGATCTGTCTGCTTCTGCGCTCCAAATGCATGCACCATT
TGCCTGGTCAGATAGCACAACAAATTTTTTTTTCTTTTCATTTTTCATTA
GGTATTTAGCTTATTTACTTTTCCTATGCCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g05.g1 MSMg01no321_g05.g1 CHROMAT_FILE:
MSMg01no321_g05.g1 PHD_FILE: MSMg01no321_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:07 2005
         (342 letters)



>mm_chr4_104720039_104720780
          Length = 742

 Score =  627 bits (324), Expect = 0.0
 Identities = 336/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcatacaagggctggagagatggctccatggttaagagcacttgctcagagaacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tgtcatacaagggctggagagatggctccatggttaagagcacttgctcagagaacccag 671

                                                                       
Query: 61  gttcgattcccagtacctactggagggctcccaactcccagggaatctgacactatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gttcgattcccagtacctactggagggctcccaactcccagggaatctgacactatcttc 611

                                                                       
Query: 121 tgacctctctgggaatcagacttacaagacatagatgcagtctaaagactcatactttta 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 610 tgacctctctgggaatcagacatacaagacatagatgcagtcaaaagactcatactttta 551

                                                                       
Query: 181 agataaaaatttaaaaataaataagtaatgttttagaaaagatacaaattaaacattgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agataaaaatttaaaaataaataagtaatgttttagaaaagatacaaattaaacattgtc 491

                                                                       
Query: 241 tatatggtactattaaagcactttagttaatttcaagttttgtttaaaatgtgtgctaaa 300
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tatatggtactagtaaagtactttagttaatttcaagttttgtttaaaatgtgtgctaaa 431

                                                   
Query: 301 gtgcaaaatttctgtcacataatcattttctttcttgtag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtgcaaaatttctgtcacataatcattttctttcttgtag 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)