Query= MSMg01no321_j22.b1 MSMg01no321_j22.b1 CHROMAT_FILE:
MSMg01no321_j22.b1 PHD_FILE: MSMg01no321_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:24 2005
(690 letters)
>mm_chr4_44992950_44994041
Length = 1092
Score = 1265 bits (654), Expect = 0.0
Identities = 681/690 (98%), Gaps = 2/690 (0%)
Strand = Plus / Minus
Query: 3 cggaattctaagccgagcctgccctgcatgctgagggaggagactgagggagagggtctg 62
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cggaattctaagccgagcctgacctgcatgctgagggaggagactgagggagagggtctg 906
Query: 63 agtccagacattatagctttaatacttagaataattccttactgggactttacaattgtg 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 905 agtccagacattatagctttaatacttagaatgattccttactgggactttacaattgtg 846
Query: 123 atgatattttagcccatcacgggccacccaggcaagctagacacaagtgctaactgtctg 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 845 atgatattttagcccatcacgggccacccaggcgagctagacacaagtgctaactgtctg 786
Query: 183 gaagcagttcctgagcaagcagggaccaggtatgctgagccacgggtagatccagggttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaagcagttcctgagcaagcagggaccaggtatgctgagccacgggtagatccagggttt 726
Query: 243 gcaggtagatgggactgagtctggatcttggctttaaccctttccagttgtttgaccttg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gcaggtagatgggactgagtctggatcttggctttaaccctttccagttgtttgaccttt 666
Query: 303 aaccctaatctgcattcccacccctgtttcttcaggcacatcgtgaggttagcatttcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaccctaatctgcattcccacccctgtttcttcaggcacatcgtgaggttagcatttcct 606
Query: 363 ttgaa-gttgttttcaccactgaacaggggtgcttagcctgagggtggcagagctcaagc 421
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgaaggttgttttcactactgaacaggggtgcttagcctgagggtggcagagctcaagc 546
Query: 422 tgcaatgcccagatgcctggagc-aaatgcccgattcaccaccgtgagcaattattaaac 480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcaatgcccagatgcctggggctaaatgcccgattcaccaccgtgagcaattattaaac 486
Query: 481 gttgtgtgcctccatgtcttccttatttgtcccatggggattgtagtaatgcttgccttg 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 485 gttgtgtgcctccatgtcttccttatctgtcccatggggattgtagtaatgcttgccttg 426
Query: 541 gcttgttgagagatgaagtatgtactgtgcttataatagagactaaggcaggcatggcga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcttgttgagagatgaagtatgtactgtgcttataatagagactaaggcaggcatggcga 366
Query: 601 ttatgcttataatccggcattcaagaggtagaggcaggactgttcaaggccagcccagac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttatgcttataatccggcattcaagaggtagaggcaggactgttcaaggccagcccagac 306
Query: 661 tttacggcaaatgatgcagatcctgaaggc 690
||||||||||||||||||||||||||||||
Sbjct: 305 tttacggcaaatgatgcagatcctgaaggc 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1092
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1082
Effective search space: 735760
Effective search space used: 735760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_j22.g1 MSMg01no321_j22.g1 CHROMAT_FILE:
MSMg01no321_j22.g1 PHD_FILE: MSMg01no321_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:24 2005
(355 letters)
>mm_chr4_44937745_44938499
Length = 755
Score = 671 bits (347), Expect = 0.0
Identities = 353/355 (99%)
Strand = Plus / Plus
Query: 1 ttttttaaagattcttttcttacctatacactatttttctatatcaagaactcctctctc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttaaagattcttttcttatctatacactatttttctatatcaagaactcctctctc 260
Query: 61 acctatgcctgcaaccccaaaccacctgattgcagcattagataaaatgttagtaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctatgcctgcaaccccaaaccacctgattgcagcattagataaaatgttagtaagcag 320
Query: 121 actagcgctctattacagaaactcagtaagcatgagagagaaatttaccaaagtgcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagcgctctattacagaaactcagtaagcatgagagagaaatttaccaaagtgcatac 380
Query: 181 agaaaagggaacaaataaagatggcattttcttcttctcggttaaatccactaccttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaagggaacaaataaagatggcattttcttcttctcggttaaatccactaccttctt 440
Query: 241 gagggtctgctctggcccctgtctgtcctctcctttcaactcttcctctcagctagcctc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gagggtctgctctggcccctgtctgtcctctcctttcaactctccctctcagctagcctc 500
Query: 301 atctggctgctcccactaaaaatgccaccaaccaactcttcctcctaagcactgt 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctggctgctcccactaaaaatgccaccaaccaactcttcctcctaagcactgt 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
