BAC Information

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BAC

Clone NameMSMg01-322B10
Chromosome4 (Build37)
Map Location 94,185,415 - 94,185,695
singlet/doubletsinglet
Overlap gene5830433M19Rik
Upstream genenone
Downstream genePlaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B10.T7 (MSMg01no322_b10.b1)MSMg01-322B10.TJ (MSMg01no322_b10.g1)
ACCAG440881AG440882
length702700
length of high quality
(start - end)
326 (39 - 364)287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no322_b10.b1 PHD_FILE: MSMg01no322_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:58 2005CHROMAT_FILE: MSMg01no322_b10.g1 PHD_FILE: MSMg01no322_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGG
AATTCTGTTTATGCCCTGTACCCCAATTTTAATAGGGTTATTTTCACAGA
CCACATGAAGCTCAAGAAGAAGGAAGACCAAAATGTGGGTGCTTTGGTCT
TTTTAGAAGGGGGAACAAAATACTCAAGGGGGCAAATACAGAGACAACGT
GTAGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGG
AGCCACCCCATATACTGTCACCAAACACAGACACTACTGTGGATGCCAAC
AAGTGCTTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTG
CCAGTGCCTGACATATATAGAGGCGGATGCTTGCAGCCAACCATTGGACT
GAGCACATGGTCCCCCAATGGAGGAGTTAGAGAAAGGTCTGAAGGAGTTG
AAGGAGTTTGCAACCCCATAGGAAGAACAACAATACCAACAAACAAGACC
CCCCACACACACACCCACAGAGCTCCCAGGAACTAAATCACCAACGGACG
AGTACATGGAGAGACCCATGGCTCCAGCCATATATGTAGCAGAGGATTGC
CTTATCAGACTTCAATGGGAGGAGAGGCCCTTGTTAAGGCTCAATGCTCC
ACTGTAGGGGAATTTGAGGTCAGGGAGGCGGGAGTGGATGGCGACGCCTA
TG
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTCCAAGGAATTCCATATTCATCCTTAGCACTGCTAGTT
TCAGACATGGTATTTCCCATCAGTACTTTACAAAGAAACATCACCTTAAC
TGACAGTGGACACCTGAGTCCTCCCTGGATAACTACTCAAGTCATACTTG
AGTCTTTTACAAATGAAAAAAAAAAAAAAGAATTGAAAGCAAATTTAAAT
AACATGTCTGTTCCATATAGAAACAATAGGTCATAATAAGAGTCATGCTG
AAAGAGCAAACAGAAAATTCAGTGCTGCTTTATATTCTGGCCTACTGAAC
TTAAGGATTATTGTGAGCCCACTGCCTGTTACAGAAACAGTATTACATTT
TCAGAGTTTTGAACACACAAATAGGTAATAATTTGTTCATTTAAAATTTA
CCTGAAAGATATTCTGCATAAATAAAACTTCCAGATAATTCATTCTCATC
TTACTAGGCAGCAAAGAATTTTATATTTTACTTATGAACATTTTCTTAAA
CAAACAAAAAAAATTTTACTTCTCTTTGTTTTAAGAGGCGTGGAACTGGA
TTGATTCAATGGTAGACCACTTGCCTAGCATACAGGAACTCCTTCTTGAG
TTCCATCCTCATCCCCAGGAAAACAAAACTAACAGCTACATCAAATATCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b10.g1 MSMg01no322_b10.g1 CHROMAT_FILE:
MSMg01no322_b10.g1 PHD_FILE: MSMg01no322_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:58 2005
         (287 letters)



>mm_chr4_94185215_94185905
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 277/281 (98%), Gaps = 4/281 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattccatattcatccttagcactgctagtttcagacatggtatttcccatcagtacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccatattcatccttagcactgctagtttcagacatggtatttcccatcagtacttt 260

                                                                       
Query: 61  acaaagaaacatcaccttaact----gacagtggacacctgagtcctccctggataacta 116
           ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagaaacatcaccttaactaactgacagtggacacctgagtcctccctggataacta 320

                                                                       
Query: 117 ctcaagtcatacttgagtcttttacaaatgaaaaaaaaaaaaaagaattgaaagcaaatt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaagtcatacttgagtcttttacaaatgaaaaaaaaaaaaaagaattgaaagcaaatt 380

                                                                       
Query: 177 taaataacatgtctgttccatatagaaacaataggtcataataagagtcatgctgaaaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataacatgtctgttccatatagaaacaataggtcataataagagtcatgctgaaaga 440

                                                    
Query: 237 gcaaacagaaaattcagtgctgctttatattctggcctact 277
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaacagaaaattcagtgctgctttatattctggcctact 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 691
Length adjustment: 9
Effective length of query: 278
Effective length of database: 682
Effective search space:   189596
Effective search space used:   189596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)