BAC Information

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BAC

Clone NameMSMg01-322D21
Chromosome4 (Build37)
Map Location 120,687,821 - 120,688,465
singlet/doubletsinglet
Overlap geneSmap1l
Upstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69
Downstream geneCol9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927, LOC666931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322D21.T7 (MSMg01no322_d21.b1)MSMg01-322D21.TJ (MSMg01no322_d21.g1)
ACCAG440992AG440993
length723728
length of high quality
(start - end)
645 (72 - 716)623 (77 - 699)
definitionCHROMAT_FILE: MSMg01no322_d21.b1 PHD_FILE: MSMg01no322_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005CHROMAT_FILE: MSMg01no322_d21.g1 PHD_FILE: MSMg01no322_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACATTTCCGTAAGTAGGAGCAGCTATAATTGGGAGGGGGTAT
TCACTTTAGTTCATTTCCTGAATTTGCCATGTAGCATATGGGTATAAAGT
AGTATAAAGCATTCAGATGTGTGTGTGTATTAATGTTGAGAAAAGCAATA
GATACTTAGCCCATACTTCATGTGATTATGGTTTATTTTAGAGTAAGCTT
ATGTAAGGAGGGCGCAAGAATGATGATGCATTGATTTAGACTCCTAGTAA
TAAATTTTAGTGACCTCTATCATTAGGCAAATGCAGTGAACTGTCAGCAA
AGCAGGTCCCCAGACTTCTCTCGAGAATTTTTGCGTTAACAGGAGTTCAA
TTTATGTTGAGGAGTCTAAACTTCTTGTAGCTTGATTCTTGTTAGATCTA
CTGGAAGGTTTGGTTTGCAGTGTAGGAGCACCTTTGGTCTACTCAAATCC
TCTGATGTCCTCATTGACAATTTTAAGTTGCATCGAGGCATCCACTGAGC
AGAAACCATTGTTGATGATTTTTAGAACCGCCCCCTCCCCTGTACTCATG
TTGTTCGTATGCTTACTCATCCCAATAACATATACCATGGGGAAGAGACA
CGTTAATTTATCAGGTCTTCCTCCAAATCTCCCATTGCCCTTTATTAATA
GCCTTACTGGATATAATCAGACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGAATACACAGAG
AAACTCTGTTTGGAAATAAATAAATAAGGTGTGGCCATGTTGGATGGGGT
GTATTTCTAGGGGTGGGCTTTAAGGTTTCAAAAGCCCACACTAGGCCTTC
TTTGTCTCTGCCTGTAACCTGCAGATCTTGTGAGCTCTCAACTACTGCTC
GAGCATCATGCCTGCCTACCTGCTTGTCTGCTGCCACACTTCCCAGTCAT
AATGACTAGTCCTCTGGAACTGTAAGTAAGGCAGTTAAATGCTTGCTTTT
ACAAGTTGCTTTGGTCACAGTGCCTTTTCACAGCAATAGGATAGTAACGG
GAAGTGAATGAAAACAAGAACCGTTGCCTGGTGTGATGGCATGGGCCTTT
ATCCCAGCACTCAGGAGGCAGGCGCAGGCAGATCTCTGTGAATGAAAGGC
CAGCCACTAAACAAAACAAAGCAAAGCAAAACCAAACAAAACATGAAAAG
AAGTGTAAGATGTGTTGGGAACTGGGTGTAGTGGTTCACACCTGTAAACT
CAGCACTCAAGTAGCTGAGGCAAGGACTGGAGAGATGGCTCAGCAGTTAA
GAGCACTGACTGCCCTTCCTGAGTTCAAGTCCCAGGAACCATATGGTGGT
TCACAACCATCTGAAATGACATCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_d21.b1 MSMg01no322_d21.b1 CHROMAT_FILE:
MSMg01no322_d21.b1 PHD_FILE: MSMg01no322_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (645 letters)



>mm_chr4_120687621_120688665
          Length = 1045

 Score = 1162 bits (601), Expect = 0.0
 Identities = 634/645 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggagcagctataattgggagggggtattcactttagttcatttcctgaatttgccatg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 845 taggagcagctataattgggagggggtatttactttagttcatttcctgaatttgccatg 786

                                                                       
Query: 61  tagcatatgggtataaagtagtataaagcattcagatgtgtgtgtgtattaatgttgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tagcatatgggtataaagtagtataaagcattcagatgtgtgtgtgtattaatgttgaga 726

                                                                       
Query: 121 aaagcaatagatacttagcccatacttcatgtgattatggtttattttagagtaagctta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 725 aaagcaatagatacttagcccatacttcatgtgattatggtttattttagagtaaggtta 666

                                                                       
Query: 181 tgtaaggagggcgcaagaatgatgatgcattgatttagactcctagtaataaattttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtaaggagggcgcaagaatgatgatgcattgatttagactcctagtaataaattttagt 606

                                                                       
Query: 241 gacctctatcattaggcaaatgcagtgaactgtcagcaaagcaggtccccagacttctct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gacctctatcagtaggcaaatgcagtgaactgtcagcaaagcaggtccccagacttctct 546

                                                                       
Query: 301 cgagaatttttgcgttaacaggagttcaatttatgttgaggagtctaaacttcttgtagc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 545 cgagaatttttgcgttaacaggagttcaatttatgttgaggagtcgaaatttcttgtagc 486

                                                                       
Query: 361 ttgattcttgttagatctactggaaggtttggtttgcagtgtaggagcacctttggtcta 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 485 ttgattcttgttagatctactggaaggtttggtttacagtgtaggagcacctttggtcta 426

                                                                       
Query: 421 ctcaaatcctctgatgtcctcattgacaattttaagttgcatcgaggcatccactgagca 480
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 425 ctcaaatcctctgatgtcctcattgacaattttaagtcgcagcgaggcatccactgagca 366

                                                                       
Query: 481 gaaaccattgttgatgatttttagaaccgccccctcccctgtactcatgttgttcgtatg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 gaaaccattgttgatgatttttagaaccgccccctcccctgtactcatgttgtttgtatg 306

                                                                       
Query: 541 cttactcatcccaataacatataccatggggaagagacacgttaatttatcaggtcttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 305 cttactcatcccaataacatataccatggggaagagacacgttaatttaccaggtcttcc 246

                                                        
Query: 601 tccaaatctcccattgccctttattaatagccttactggatataa 645
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 245 tccaaatctcccattgccctttattaatagccttactagatataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)