BAC Information

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BAC

Clone NameMSMg01-322D24
Chromosome4 (Build37)
Map Location 106,728,735 - 106,917,961
singlet/doubletdoublet
Overlap geneMrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3
Downstream gene2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322D24.T7 (MSMg01no322_d24.b1)MSMg01-322D24.TJ (MSMg01no322_d24.g1)
ACCAG440998AG440999
length730727
length of high quality
(start - end)		338 (388 - 725)274 (433 - 706)
definitionCHROMAT_FILE: MSMg01no322_d24.b1 PHD_FILE: MSMg01no322_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005CHROMAT_FILE: MSMg01no322_d24.g1 PHD_FILE: MSMg01no322_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,917,619 - 106,917,961)(106,728,735 - 106,728,997)
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCACCCCATTTCCCGTAGCATATGTTGCTTTAAAAGGATTAGGCCAG
AGGACACCGAGCAGAACCTTGGCACTTGCACAAAGCAGGCATTTCCTGAA
AATTATGTGTGCTGTAGCCTACATGGGATTGCTGCCAATGAAAGGAAAAC
ACTTATCTTGCTGAATGACAAAGCCAGTTTATTTAACATTTTATCCCTCC
ACCTCCCTTCTTCCTTCCTTGGTAGGATCTTGTACTAGCTCAGGTTGGCC
TTATACTGTCAAACTCCTGCTCAGTCTCCTGGGTGCTATGATAGGCATGG
GCAACCTTGCCATGTTTTATTCCTCACCCCACCCCCAGTTAGAGGGGTGA
AAAGCAGAATTATGTATAAAGACTCCATATTTGAGAATATATAAAACTAA
GATGAAAACTTTACAGTTCTACCACAGTATTGATGTTCAAAAACATACTT
TCCCTCATTAGACTGCGTGCTCTACAGCTGGTGTTCTGCTTTCCTGCTTT
CTCCATTATCTTTACAGTCTAAAGAGTTCCCATGCTTTTGAAAATGCTGT
TTGTCCCTAATATTCTATAGTCTCATTGGTTAGATTGTGATAATAACACT
TTAATTCACATTTGATGAGCATATTAATAATGTAAGCAGCTGCAGTAACA
ATACGTGAGTGTAACATTTCTGGGAAGTAA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAAATTCACTGTGTGCAAAAGCATAGCTGCCCCAGG
ACCTGGTCTTTAATAGGCAACAAGGCATACGGTGTGGTCTGCATACAGCA
CATACCAATGTCTCACAGACAATCTCACACCAATGCAATACTAAGACTTT
ATTTCCATAGAGACACCAGACCGAGGGAGAGTGGAAGGCTCGCCCAGGCT
CCAGCACCACTGTCCCAGGACATGAGTTCTTCTGAGGCAGGAAGGTAGTA
GGGCATCAGGCTCCATATTGTTCTTAGTTCACACAACACCATGCAAGTAC
AGAGCTAATTTTTTTCCTGAACGCCCCCCCCTGGAAATCAACAGGCCCAA
CAGGTTCCTGGAAAACCCCACACACCATTAAGATTCTACTACCATTTCAT
GGCAGCAAAGGAAATGGGTCACTTCCTCAGAGTCACCAGTGCCTGGCGAG
TCACTGTCATCTCCTGCAACATCTCTCAGTGAACAAGGACACCATGGAGC
CGGTGCTGCATATAGGCAGGGTTCCCAGCACTTGTCTGCCATGTCATCTG
CTGACACTGCTCTGGCTCCCTACGTCCCTCACTCCAGCCACCAGGGAATG
ACAAGAACCCCCAGTCTACTATACTGGTTTGCAGGTTCCTCTCTCACTGC
TAGAGGCCCAGGAGGGATGTAGATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_d24.b1 MSMg01no322_d24.b1 CHROMAT_FILE:
MSMg01no322_d24.b1 PHD_FILE: MSMg01no322_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (338 letters)



>mm_chr4_106917419_106918161
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 337/343 (98%), Gaps = 5/343 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttagaggggtgaaaagcagaattatgtataaagactccatatttgagaatatataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gttagaggggtgaaaagcagaattatgtataaagactccatatttgagaatatataaaac 484

                                                                       
Query: 61  taagatgaaaactttacagttctaccacagtattgatgttcaaaaacatactttccctca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taaaatgaaaactttacagttctaccacagtattgatgttcaaaaacatactttccctca 424

                                                                       
Query: 121 ttagactgcgtgctctacagctggtgttctgctttcctgctttctccattatctttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttagactgcgtgctctacagctggtgttctgctttcctgctttctccattatctttacag 364

                                                                       
Query: 181 tctaaagagttcccatgcttttgaaaatgctgtttgtccctaatattctatagtctcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctaaagagttcccatgcttttgaaaatgctgtttgtccctaatattctatagtctcatt 304

                                                                       
Query: 241 ggttagattgtgataataacactttaattcacatttgatgagcatattaataatgtaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggttagattgtgataataacactttaattcacatttgatgagcatattaataatgtaagc 244

                                                      
Query: 301 agctgcagt-----aacaatacgtgagtgtaacatttctggga 338
           |||||||||     |||||||||||||||||||||||||||||
Sbjct: 243 agctgcagtaacaaaacaatacgtgagtgtaacatttctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 743
Length adjustment: 9
Effective length of query: 329
Effective length of database: 734
Effective search space:   241486
Effective search space used:   241486
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no322_d24.g1 MSMg01no322_d24.g1 CHROMAT_FILE:
MSMg01no322_d24.g1 PHD_FILE: MSMg01no322_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (274 letters)



>mm_chr4_106728535_106729208
          Length = 674

 Score =  426 bits (220), Expect = e-123
 Identities = 256/274 (93%), Gaps = 11/274 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctactaccatttcatggcagcaaaggaaatgggtcacttcctcagagtcaccagtgc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 attctactaccatttcatggcagcaaaggaaatggatcacttcctcagagtcaccagtgc 260

                                                                       
Query: 61  ctggcgagtcactgtcatctcctgcaacatctctcagtgaacaaggacaccatggagccg 120
           |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 261 ctggcgagtcactgtcatctcctgcatcatctctcggtgaacaaggacaccaaggagccg 320

                                                                       
Query: 121 gtgctgcatataggcagggttcccagcacttgtctgccatgtcatctgctgacactgctc 180
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 321 gtgctgcatataggcagggttcccagcacctgtcagccatgtcatctgctgacactgctc 380

                                                                       
Query: 181 tggctccctacgtccctcactccagccaccagggaatgacaagaacccccagtctactat 240
           ||       ||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tg-------ac----ctcactccagccaccagggaatgacaagaacccccagtctactat 429

                                             
Query: 241 actggtttgcaggttcctctctcactgctagagg 274
           ||||||||||||||||||||||||||||| ||||
Sbjct: 430 actggtttgcaggttcctctctcactgctggagg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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