BAC Information

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BAC

Clone NameMSMg01-322F01
Chromosome4 (Build37)
Map Location 80,456,796 - 80,457,327
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131, LOC100040144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322F01.T7 (MSMg01no322_f01.b1)MSMg01-322F01.TJ (MSMg01no322_f01.g1)
ACCAG441047AG441048
length757750
length of high quality
(start - end)
466 (72 - 537)529 (78 - 606)
definitionCHROMAT_FILE: MSMg01no322_f01.b1 PHD_FILE: MSMg01no322_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:15 2005CHROMAT_FILE: MSMg01no322_f01.g1 PHD_FILE: MSMg01no322_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAACCGCGGA
ATTCTTTGTTTATTTCTGAGACCCATTTTTTAATGGGGTTATTTGGTTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTTATTTAGGATAGGTAAAGATCCATTCCCAATCTGTTGGTGGCCTTT
TTGTCTTACTGACAGTGTCTTTTGCCTTACAGAAGATTTGCAATTTTATG
AGGTCCCATTTGTTAATTCTTGATCTTACAGCACAAGCCAATGCTGTTCT
ACTCAGGAATTTTTGACCTGTGTTCATATCTTCTAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCACTGTCTCTGGCTTTATGTGGAGTTCTTTAATC
CACTTAGATTTGACCTTACCACAAAGAGATAGGAATGGATCAATTTGCAT
TTTTCTACATGTTAACTGCCGGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCTAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCCATTCTATTCCCTTGGTC
TACTTGTCTGTTGTTATACCAGTTCCATGCCGCTTTTTATAACAATTGGC
TCTGTAGTATAGCTCCTAGCCAGGCATGTTGATTCCCCCCAGAGGTTTCT
TTTATCCTTTGAAAATATTTTTCCCAGGGTCTACTGGATATAGGGATATC
TTTTCTT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTGTGATTGGTCCAACTGA
TCATGCATCTAACTTAACTATTGTTGTGGATTGTGAATGCTGTTTTTGGC
TCTTCTTGTGGTGAAGAGTCATCAATGTTTGTGGGGTTTGTGTTCTACCT
ATTTACAGAATCCCTTCAAGGTTCCAAGATGAGAAACATGCCAAAGCCAC
GGATCCTGGTTCTGCACACAAACAGCTTTTGAAGAAAAAATACAAAAACA
CACTATTCTTCTGAAGCTCACACATACTAAAATTTTATATTCCTTTTCTT
ACCTACAAAGTGTTGAATTTCCTTTGATCCTTAATTCTAAAATTAGTGCA
TACACTTGATTTTCTCCATTAACTTATCTAAATCTATCTTCCACATTTCA
GTGACCCTTTCCAGTCATCCCTCCTACAATCTTTCTTGTCTCCCCCTTCC
CTTCTCCTATGAGTGAGTGGGATGCCCTGGGTATCCCTCTATCCTTGTAC
ATCAAATTTGTGCAAGGCTAGGCATGTCCTCTCCCATTGAGGCCACATAA
GGCAGTCCAGTTAGAAGAATATACCCAACATACAGGCAACAATTTCTGAG
TTACCCAACCACCCCTGTTACAGTTGTTTGGGACCCACATGAAGACCAAA
CCTCACATTTGCTATGTATGTGCAGGAAGGCCTGGGTCTGGCCTATGCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_f01.g1 MSMg01no322_f01.g1 CHROMAT_FILE:
MSMg01no322_f01.g1 PHD_FILE: MSMg01no322_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:15 2005
         (529 letters)



>mm_chr4_80456748_80457679
          Length = 932

 Score =  919 bits (475), Expect = 0.0
 Identities = 518/533 (97%), Gaps = 5/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccttgtgattggtccaactgatcatgcatctaacttaactattgttgtggattgtgaa 60
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 580 ctccttgtgagtggtccaactgatcatgcatctaacttaactgttgttgtggattgtgaa 521

                                                                       
Query: 61  tgctgtttttggctcttcttgtggtgaagagtcatcaatgtttgtggggtttgtgttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgctgtttttggctcttcttgtggtgaagagtcatcaatgtttgtggggtttgtgttcta 461

                                                                       
Query: 121 cctatttacagaatcccttcaaggttccaagatgagaaacatgccaaagccacggatcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 460 cctatttacagaatcccttcaaggttccaagatgagaaacatgccaaagccacaaatcct 401

                                                                       
Query: 181 ggttctgcacacaaacagcttttgaaga-aaaaatacaaaaacacac--tattcttctga 237
           ||||||||||||||||||| | |||||| ||||||||||||||| ||  |||||||||||
Sbjct: 400 ggttctgcacacaaacagcctgtgaagataaaaatacaaaaacatactttattcttctga 341

                                                                       
Query: 238 agctcacacatactaaaattttatattccttttcttacctacaaagtgttgaatttcctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agctcacacatactaaaattttatattccttttcttacctacaaagtgttgaatttcctt 281

                                                                       
Query: 298 tgatccttaattctaaaattagtgcatacacttgattttctccattaacttatctaaatc 357
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 tgatccttaattctgaaattagtgcatacacttgattttctccattaatttatctaaatc 221

                                                                       
Query: 358 tatcttccacatttcagtgaccctttccagtcatccctcctacaatctttcttgtctccc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tatcttccacatttcagtgaccctttccagtcatccctcctacaatctttcttgtctccc 161

                                                                       
Query: 418 ccttcccttctcctatgagtgagtgggatgccctgggtatccctctatccttgtacatca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ccttcccttctcctatgagtgagtgggatgccctgggtatccctctatccttgtacatca 101

                                                                
Query: 478 aatttgtgcaaggctaggca-tgtcctctcccattgaggccacataaggcagt 529
           |||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 100 aatttgtgcaaggctaggcact-tcctctcccattgaggccacaaaaggcagt 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 932
Length adjustment: 10
Effective length of query: 519
Effective length of database: 922
Effective search space:   478518
Effective search space used:   478518
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)