Query= MSMg01no322_p21.b1 MSMg01no322_p21.b1 CHROMAT_FILE:
MSMg01no322_p21.b1 PHD_FILE: MSMg01no322_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:04 2005
(681 letters)
>mm_chr4_130375154_130376234
Length = 1081
Score = 1249 bits (646), Expect = 0.0
Identities = 671/680 (98%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatgtcctgtccaacattaaaagattgtcagccaactaggtgtggtagcacaca 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcatgtcctgagcaacattaaaagattgtcagccaactaggtgtggtagcacaca 261
Query: 64 attttaatcccagcactttaaaggcagaggcgggcagatctctatgagtttgaggacagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attttaatcccagcactttaaaggcagaggcgggcagatctctatgagtttgaggacagc 321
Query: 124 ctgatctacagcatgagttccaggatggccagagctagaccctgtctcaggaaaacaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgatctacagcatgagttccaggatggccagagctagaccctgtctcaggaaaacaaag 381
Query: 184 aaaagaaagagtaaataagaggttgtccgcctggatttaagccacctgccatcctttttc 243
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaagaaagagtaaataagtggctgtccgcctggatttaagccacctgccatcctttttc 441
Query: 244 tctttcgtcttaagacattagtaggtggttggtgctttctgtgtcttcatttctttacct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctttcgtcttaagacattagtaggtggttggtgctttctgtgtcttcatttctttacct 501
Query: 304 gtgaagggaagaccagagaaggtacacacactggtaatcttatcactggggaaactgagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgaagggaagaccagagaaggtacacacactggtaatcttatcactggggaaactgagg 561
Query: 364 caggaggaccgccgcaagttcagttcagcctgggctatgcagtaagactgtttcaaagag 423
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggaggattgctgcaagttcagttcagcctgggctatgcagtaagactgtttcaaagag 621
Query: 424 agaggcagagacagaga--cagggagagaggcctggtgtggtctgtacatggtctttcct 481
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaggcagagacagagagacagggagagaggcctggtgtggtctgtacatggtctttcct 681
Query: 482 gaccatttagttcttagaattctggaacagtccacaagccagctgctccgtggttgtcat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaccatttagttcttagaattctggaacagtccacaagccagctgctccgtggttgtcat 741
Query: 542 cgtcatggcctgagggtgactaagtgggtgctgtggggagacacctggctgcagccattg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cgtcatggcctgagggtgactaagtgggtgctgtggggagacacctggctgcagccattg 801
Query: 602 tagggcattctccctgaatacttctccagccccgcccctccccattctgctgactgatca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tagggcattctccctgaatacttctccagccccgcccctccccattctgctgactgatca 861
Query: 662 cctcttttttcatgtgaggc 681
||||||||||||||||||||
Sbjct: 862 cctcttttttcatgtgaggc 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_p21.g1 MSMg01no322_p21.g1 CHROMAT_FILE:
MSMg01no322_p21.g1 PHD_FILE: MSMg01no322_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:04 2005
(648 letters)
>mm_chr4_130549951_130550998
Length = 1048
Score = 569 bits (294), Expect = e-166
Identities = 324/334 (97%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 317 tccccatggcttgttcagcttgctttcccacacaccccagatccatcagctcagggattg 376
||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||
Sbjct: 1048 tccccatggcttgttcagcttgctttcttatagaccccacatccatcagctcagggattg 989
Query: 377 ccccacccacaatggacc-gagccctccaacaagcttgcctgcctacatcccggactc-a 434
|||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |
Sbjct: 988 ccccacccacaatggaccag-gccctccaacaagcttgcctgcctacatcccagactcaa 930
Query: 435 tggaaggattggcttaattgaggctccctcctctcagatgacattaacttgtgtcaagtt 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tggaagcattggcttaattgaggctccctcctctcagatgacattaacttgtgtcaagtt 870
Query: 495 gacacaaaactatccagctcaccaggacgtggcacatacatgctccttagccccagactg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gacacaaaactatccagctcaccaggacgtggcacatacatgctccttagccccagactg 810
Query: 555 cccggctatgcatgtcacctggccttttctgctttgagtcatcctatgtgacacaggaca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cccggctatgcatgtcacctggccttttctgctttgagtcatcctatgtgacacaggaca 750
Query: 615 tgtagaactggctgtgccagctcactcacctttg 648
||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtagaactggctgtgccagctcactcacctttg 716
Score = 72.3 bits (37), Expect = 1e-16
Identities = 61/71 (85%), Gaps = 8/71 (11%)
Strand = Plus / Minus
Query: 269 gcaggagctgatgcagaggccatggagga--gt-acagattactggtttgct-ccccatg 324
||||||||||||||||||||||||||||| || || ||||||| ||||| |||| ||
Sbjct: 199 gcaggagctgatgcagaggccatggaggaatgttac---ttactggcttgcttcccc-tg 144
Query: 325 gcttgttcagc 335
||||| |||||
Sbjct: 143 gcttgctcagc 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
