BAC Information

Click to search

BAC

Clone NameMSMg01-323D20
Chromosome4 (Build37)
Map Location 38,250,595 - 38,251,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323D20.T7 (MSMg01no323_d20.b1)MSMg01-323D20.TJ (MSMg01no323_d20.g1)
ACCAG441716AG441717
length1,2521,304
length of high quality
(start - end)
727 (56 - 782)637 (136 - 772)
definitionCHROMAT_FILE: MSMg01no323_d20.b1 PHD_FILE: MSMg01no323_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:34 2005CHROMAT_FILE: MSMg01no323_d20.g1 PHD_FILE: MSMg01no323_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGTTTTNNNNNNNATCATTGGGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTAGAAACTCTTTAATTTCTTTCTTTATTCCTTCCC
TAACACAGAGATCATTGAGTATAGAGTTGATCAATTGTCATGAGTGTCTA
AGCTTTCTGTTGTTGTTTTTGCTGTTGTTGTTGCAGTTGAAGTCCAGCTA
TATATAATCCATGTTGATCTGTAAGACACAAGGTGTTTTTTTTAAAAACA
AAAACAAAAACAAAAACAAAAACAAAAAAACTTTCTCTTACCTATTAAAG
TTTGCTTTGTGACTGACTATATGGTCAACTTTGGATAAGGATCCCTGAGG
TGGTGAGAAGAAGGTATATTCTTTTGTGTTTGGGTAAAATATTCTGTAAT
TGTCTATTATGTCCATTTAATTCATAACCTCTTAGTTTCATTATTTCTCT
GTTTAGATTTTATCTGGATGACATGTCAATTTGTGAGAGGTGGACACTGA
AGTCTGTGACTATTAATGTGGGTTTGTGTGCTCTAAGCTTTAGCAATGTT
TGCTTCACAAATGTAGGTGTCCTTGTGTTTGGAGCATAAATGTTCATAAT
TGAGATTGTAGGTAGATTTTTCCTTTGATGAGTATGAATTGTTCTTCCCT
GTCTCTTTTGATCATTTTGATTAAAACTATATTACTAGATATTAGAATGG
CTTCTCCAGCTTCCTTCTGGGGACCATTTGCTTAGAATATTTTTTCCAGT
GCTTTACTCTGAAGTAATGTCTATTTTATGGCTGAAATGTGTTTCTTGTA
TGGAACAGAACATTGNATAATGTTTTCACATCTATTATGTTAAACTGTAT
CCTTTAAAAGGAATGAGTTCACCGATGCTGAAATTTTTTTATTGAACACC
GGATATTTTCATTAATTTTGAGTGGGGGGGGGGGGGGNNNNCNNNNNNNN
NNNNNNNCNNNNNNNNAANNNNNNTNNNTNNNNNNCNNTNNNNCNNNNNN
NNNNNNNTNNNNANNTAAACNTTTTTCCCTTTTNTATATNATTNCCTCTT
ANTTTTTATTTATTCTTCTCCCATTATTACTNTATTNTAATATNNCATNA
CTCTCTTNATCTCCTCCTTAANNTTTAACTTTANCTNCTATTTACTTANC
TACCTTTTATATCNTCNCTCTCCATAACTNNCTCTTCTATNCCAAATTNN
CNNTTTACTNTTTCATCCTCCCCNCCTTTTAACTTATTTTCTACTACCTT
AT
NNNTTCGATTCCAANNNNAAAGCTAGGAGGCTGGGGCGCCXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAATGCCCCACCATA
GAGGATAGAAGAATATCTATGACCTTAAAGTACAGCTAGGCTATCTAGGC
AGAAGGGAACATTAGAATCTCTGCTCAAGAAGCTAGAACACCAGGTCAAC
ACATGGTGTGTCTTCTGACCTTTTCATCTGTGCATATACCCCAGTAAGTA
AACAGCTCCCAAAATACACAAAAGATTAAAATACGAATATAAATAAAACT
AGATAAATAAAACAACTATTCCTTAAAAGGTTGTTAAAGGAGAAAATTTG
CCAAACTCATTAGGTATTTTAGTAATTTATCGCCTTATTCTCCCATCATT
AAAAGGTAGATATAATAAAATGACTTTTTCTCCATAAAGCCACACAACAG
GAAATAATACAAAACAGAGCTTGTTTCCCAGATGGTTCTAAACCGATAAA
CAAATAAACAGAAATACCAACAAAAATTATTATAACTTTCTAAGAGACTT
GGCGACTCTAGTATATGAATCAATATTCATAACTGGGATATACTCTGTAT
AGTTCATTCACTAATATGTCACAGCTATTTTCATAGGCAAGAACAGTTCT
TTTTATGCACTCCCAGACATAGAAAGAAATCACAGAAATGCTCTCTTATA
TTAGTATAGTATTTAATGGACATATTTTAGTAAAATGTCATTAATAAATA
GCAAGCAGTCTTATTGACCTTAGGCAGTTGTGCTCCCAAATATATAGTGC
TTTTATTTGCCTTTAATNAATAATTTAGAAGAGCCTTTACTTCCATTTAT
ATTTAACTGAAGCATAGTTCCCAATAGACATCTTCTCAAATCAACAGCTA
TCATCATTTTTTTAATAGCTAAATTAACCTTGCTTCCCTATTACTGGGAA
TATCAGAAAAAAGAAGTTGTTTCTTTGAAAAAAGGGCGACTGGGATTAAA
AAAATAATGGCTACCGGGATATAAATGATTTCCAAATCTGCCCCCCCCTA
CTGAGTACCTTTGTTCCCCCGAAAATTCCCAAATGATCCCCGCGCCCAGG
AGCTTAAAGGGACAAATTTGAGGTTCCCCCGCCCTCGGAGAAATATGCCT
ATAAAGGGGAATTGAAAAAAAAATTTAACCATACGTAAATTTTCTTTTAA
AAAAGATCGGATTCCTTCCCCCCCAAAAACAACGGGAATTAAATTTAATT
TTAAGGAGGAAGGCCCAANCGCCGNCTTCTTCCTTTCTCCCCCTCCTTCC
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_d20.g1 MSMg01no323_d20.g1 CHROMAT_FILE:
MSMg01no323_d20.g1 PHD_FILE: MSMg01no323_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:34 2005
         (637 letters)



>mm_chr4_38250395_38251431
          Length = 1037

 Score = 1193 bits (617), Expect = 0.0
 Identities = 632/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggctatctaggcagaagggaacattagaatctctgctcaagaagctagaacaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ctaggctatctaggcagaagggaacattagaatctctgctcaagaagctagaacaccagg 778

                                                                       
Query: 61  tcaacacatggtgtgtcttctgaccttttcatctgtgcatataccccagtaagtaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tcaacacatggtgtgtcttctgaccttttcatctgtgcatataccccagtaagtaaacag 718

                                                                       
Query: 121 ctcccaaaatacacaaaagattaaaatacgaatataaataaaactagataaataaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctcccaaaatacacaaaagattaaaatacgaatataaataaaactagataaataaaacaa 658

                                                                       
Query: 181 ctattccttaaaaggttgttaaaggagaaaatttgccaaactcattaggtattttagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctattccttaaaaggttgttaaaggagaaaatttgccaaactcattaggtattttagtaa 598

                                                                       
Query: 241 tttatcgccttattctcccatcattaaaaggtagatataataaaatgactttttctccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttatcgccttattctcccatcattaaaaggtagatataataaaatgactttttctccat 538

                                                                       
Query: 301 aaagccacacaacaggaaataatacaaaacagagcttgtttcccagatggttctaaaccg 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaagccacacaacaggaaataagacaaaacagagcttgtttcccagatggttctaaaccg 478

                                                                       
Query: 361 ataaacaaataaacagaaataccaacaaaaattattataactttctaagagacttggcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 477 ataaacaaataaacagaaataccaacaaaaattattataactttctaagagacttggtga 418

                                                                       
Query: 421 ctctagtatatgaatcaatattcataactgggatatactctgtatagttcattcactaat 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgtagtatatgaatcaatattcataactgggatatactctgtatagttcattcactaat 358

                                                                       
Query: 481 atgtcacagctattttcataggcaagaacagttctttttatgcactcccagacatagaaa 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 atgtcacagctattttcataggcaagaacagttcttttcatgcactcccagacatagaaa 298

                                                                       
Query: 541 gaaatcacagaaatgctctcttatattagtatagtatttaatggacatattttagtaaaa 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 297 gaaatcacagaaatgctctcttatactagtatagtatttaatggacatattttagtaaaa 238

                                                
Query: 601 tgtcattaataaatagcaagcagtcttattgacctta 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtcattaataaatagcaagcagtcttattgacctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)