BAC Information

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BAC

Clone NameMSMg01-323E06
Chromosome4 (Build37)
Map Location 70,424,306 - 70,424,742
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E06.T7 (MSMg01no323_e06.b1)MSMg01-323E06.TJ (MSMg01no323_e06.g1)
ACCAG441735AG441736
length1,1871,251
length of high quality
(start - end)
521 (213 - 733)---
definitionCHROMAT_FILE: MSMg01no323_e06.b1 PHD_FILE: MSMg01no323_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:37 2005CHROMAT_FILE: MSMg01no323_e06.g1 PHD_FILE: MSMg01no323_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGTTTNNNNNNNNCTCATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCNGGAATTCTACCGAAAAGAGTAGCACGTTAAAAGGCTTATACAGT
AATGACAGTAGACCATCCCCCTCTTATATCGTTCATTTGAGGTTTATTTT
TGCAAGTAGATAAAATATTTATTTTTAATGGGTGAGTTGGCTGGTGAGTG
TCGTGGAGAGAAAAATCTTTACATTTGAAATTTTTATTTTATCCATATCT
ATATTAAATAAAACATTAGAACAAAATACAGATTTGGGGGCTCTCAAACA
GACCCTCAGAATTTGGACACACTGGTGTCAAAGGGCTTGAACATAACTAC
GGAGCTTATGTGTAGAAAAGAAACCTAAAGTGGAAGTCCTTAGGAAGATT
CTAGGATTTGACTTTATACATATTATGATAAGGGTTGAATAAGAGTATAT
TTAATAAAATTATGACAAATCTACCTAATATGGAGAAAGAAACAAACATT
TAAACACAAGAAAACTTTGAATCTCAAATATATATTACCAGAGAAGAATT
ACTACAGCATATATAGTTATTATGTCAAAATACAAAACAAAGAGACAATA
TTAAATGCTATCTGGGGAAAGCAACTTATCTACAAAGGCAATGACATCTG
AAACCCGTTAGAGCTCTCATCAGCAACCCTTTCAGCCATAAGGCATAGAA
TGGTGTGTTTTAAGCTGTAAAATATATGACAATGAAGATTGCAAGCTTTT
TTCAATTAAATGTAACCTCAGGCATGATGAGTTTCCAGAATTACAGAGGA
CAACTAAATGTTATTAAAACCAAAAAGAATTCTCTTACTAACAGAACACA
GGAAAAAAGAAATGTATTTGATGATGGGAATGGCCAAGAAAAGTGTGTTA
GGAAGGAATCCACTGCCTTGAGCTAATTTTAAAAAAGAAAATAACCTAAT
CCCCTATTCCTTAATTAAAAAGAATTTAATGAAAAACCCCCTTTTCTTTC
AATTAACTTAATTAAATTACCCGGAAATCCGTTAACCCCATCCTCATTAA
ATAACTTTGGAAAAGGTAAATGGACCTTCCCCTCCTCCACATTTATAAAA
ATAATTATGAATTATTTTTGACCGGGAGATTTAAAAAACTGGGGGTTTTA
AAAATTTCTTCGGTTGCCCCTCACGGGAGAAACTCTT
NCCATCCTTNNNNNAATGATGGCAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATAGAGCTCCCCCGAAGGGA
GAGATTTGACATTAAATCCCCTTTACACACCACCCCGGATTGATCTCTGT
GACTTCAAGTGAAATTGTGACGACGTGCACATGCATTCTGGAACTTCATT
GGTCTCTGCCGACATACCATGAACTGCGGAGAAAGAAACTGCTCTGCTAT
CCCATGATGCGCACTGAACCTATCCGCACTCCTCTGACATGACTGAACAG
AATGGACTCACCCCTGGCCTTAATAACATCTCCTTATTCACTGTACACCC
GAACGCTTGTAGGAATGTGTGTCTGACATATTCTCTCACAGTGTTCTCTC
GCACATGTACTATATCTTCATTTATACACCCCTTACAGACCAGGATGCTT
TATTCGATGCACTATCTCAAGATTTTCTGTGTGTTAATGGCGTAGCGCAT
CTATTCCTAACCTACACGTTGGAGGAGTGACTTCCCTGATAGAGCGCTCA
TTACACAAGCCTAAGATCTATTCACAAGTGACTATTTGACACACAAGCCT
GGTAGCGACGATGGTTATAACTCTCCCACTGATGAGGCAAACATGGCACA
TAGTAGACATATAGAGGCTATATGTCACTGGACAAGTCTGACTATTCATG
CTTGGATGACTAATGTCATAGAAAGAGACTGACCTACACATACCGGGTGG
AGGAGATGGATGACAGTTGATGTCACACTCTGCCTAACCACTTACTCATT
CATTCATTCAATCGCGTGGTCATGTGCTCACAGGCACACTTTATTACCCA
TGCACACACATGCATCCCTGCATACTTACACGCACAACCATGTATGCACA
TACTCATGGACAACCAGGGACTTACACCTACTTGTATACCCCCTTACCCC
CCAGCAATCCAAAGGTGGTGGGAGCATTTGGAAAGGTGGGTTACGTTTTC
CGTGGCCAACCCTGGGAAATTTATTTTTTTTACGTTGGACTTGGGGAACT
AATGGTCCCGAAAGCCCCCCAGAGGGAAAACCTGAAAAAAACTACACCTC
TTCCTCTGAAAAAAAAGATGGGGCCTAAATATCCCACCTTGCATAATAAA
ATTCTGTTTCACTCCTGTAAAAATCCTCCCCACATTTCTATATGAAAAGA
TTCGCTCTTCTCACTCTTGACGATGACTTTTTTTATTAAACACCTCTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e06.b1 MSMg01no323_e06.b1 CHROMAT_FILE:
MSMg01no323_e06.b1 PHD_FILE: MSMg01no323_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:37 2005
         (521 letters)



>mm_chr4_70424306_70425226
          Length = 921

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctttacatttgaaatttttattttatccatatctatattaaataaaacattagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatctttacatttgaaatttttattttatccatatctatattaaataaaacattagaac 378

                                                                       
Query: 61  aaaatacagatttgggggctctcaaacagaccctcagaatttggacacactggtgtcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaatacagatttgggggctctcaaacagaccctcagaatttggacacactggtgtcaaa 318

                                                                       
Query: 121 gggcttgaacataactacggagcttatgtgtagaaaagaaacctaaagtggaagtcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gggcttgaacataactacggagcttatgtgtagaaaagaaacctaaagtggaagtcctta 258

                                                                       
Query: 181 ggaagattctaggatttgactttatacatattatgataagggttgaataagagtatattt 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggaagattctaggacatgactttatacatattatgataagggttgaataagagtatattt 198

                                                                       
Query: 241 aataaaattatgacaaatctacctaatatggagaaagaaacaaacatttaaacacaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aataaaattatgacaaatctacctaatatggagaaagaaacaaacatttaaacacaagaa 138

                                                                       
Query: 301 aactttgaatctcaaatatatattaccagagaagaattactacagcatatatagttatta 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 137 aactttgaatctcaaatatatattaccagagaagaattactacaccatatatagttatta 78

                                                                       
Query: 361 tgtcaaaatacaaaacaaagagacaatattaaatgctatctggggaaagcaacttatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tgtcaaaatacaaaacaaagagacaatattaaatgctatctggggaaagcaacttatcta 18

                            
Query: 421 caaaggcaatgacatct 437
           |||||||||||||||||
Sbjct: 17  caaaggcaatgacatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)