Query= MSMg01no323_f24.b1 MSMg01no323_f24.b1 CHROMAT_FILE:
MSMg01no323_f24.b1 PHD_FILE: MSMg01no323_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:51 2005
(454 letters)
>mm_chr4_7349635_7350488
Length = 854
Score = 688 bits (356), Expect = 0.0
Identities = 416/454 (91%), Gaps = 32/454 (7%)
Strand = Plus / Plus
Query: 29 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagaga- 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag 264
Query: 88 -----------------------cagacagacagacagacagacaga--gagacagagag 122
|||||||||||||||||||||||| |||||||||||
Sbjct: 265 agagagaaagagagagagagagacagacagacagacagacagacagacagagacagagag 324
Query: 123 aga--gacagagagagatttatgtccatacaggttagtaattagccttgcagtataattt 180
||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacagagagagagaga---a-gtccatacaggttagtaattagccttgcagtataattt 380
Query: 181 tcttttattacaaacaatgaaaacaaattctgaattgagaaggtagtgcctgctgggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttattacaaacaatgaaaacaaattctgaattgagaaggtagtgcctgctgggaga 440
Query: 241 ctgtgattggaagcctacaacacagagtttgggtgagcgaaatatgctcataaaattgag 300
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgattggaagcctagagcacagagtttgggtgagcgaaatatgctcataaaattgag 500
Query: 301 acaggcagtgctggctgattaattaacccagtttgctttactctctttcttttcacacag 360
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 acaggcggtgctggctgattaattaacccaatttgctttactctctttcttttcacacag 560
Query: 361 cctgtcttttaagctgttttaaggttcaaagtcattagaaagtatgcttgtttgtcctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtcttttaagctgttttaaggttcaaagtcattagaaagtatgcttgtttgtcctag 620
Query: 421 atttgggtaccacttattcttgattggagtgggc 454
||||||||| ||||||||||||||||||||||||
Sbjct: 621 atttgggtatcacttattcttgattggagtgggc 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_f24.g1 MSMg01no323_f24.g1 CHROMAT_FILE:
MSMg01no323_f24.g1 PHD_FILE: MSMg01no323_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:51 2005
(742 letters)
>mm_chr4_7510311_7511447
Length = 1137
Score = 1367 bits (707), Expect = 0.0
Identities = 732/743 (98%), Gaps = 7/743 (0%)
Strand = Plus / Minus
Query: 1 tatagactgtctctattgtgtttgaaaaaaaatgcttcaattcctaattggacggttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 937 tatagactgtctctattgtgtttgaaaaaaaatgcttcaattcctaattgggcggttaat 878
Query: 61 cctattttttgcgtggctagtcaatttggtacagtaggaatcagaccaagtgctcaccan 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 cctattttttgcgtggctagtcaatttggtacagtaggaatcagaccaagtgctcacca- 819
Query: 121 a-agaatgtttgagatattttctttcagacttttctgtgtagatctggtcttgttgagag 179
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 818 agagaatgtttgagatattttctttccgacttttctgtgtagatctggtcttgttgagag 759
Query: 180 gtcctaatgtgtacattgtcagatggccatcgtggtttggaagaataaacagttatctgg 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 758 gtcctaatgtgtacattgtcagatggccatcgtggtttggaagaata-----ttatctgg 704
Query: 240 aggtgcttccttgttaatatttttgccttaatttgcttaattgtgggccatatggtaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aggtgcttccttgttaatatttttgccttaatttgcttaattgtgggccatatggtaaaa 644
Query: 300 atctttagatctttatctcagtagtattttttggtgagaaaataaagcattcatataaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atctttagatctttatctcagtagtattttttggtgagaaaataaagcattcatataaat 584
Query: 360 gctataactctataaatactataatgcatataagtgctataatatatagtggttatattt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gctataactctataaatactataatgcatataagtgctataatatatagtggttatattt 524
Query: 420 atgtacaaaattcttttcagctttcatctagggaaataatttcagtaggtaaagttacca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgtacaaaattcttttcagctttcatctagggaaataatttcagtaggtaaagttacca 464
Query: 480 aaaatccaggcaagtaacataaggggaaaactggagtatggttgaaactagatttctgac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaatccaggcaagtaacataaggggaaaactggagtatggttgaaactagatttctgac 404
Query: 540 ttaaaacttactgtaagtcttcccccatgaagtaaaaccttctagggaggggtcttctag 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 403 ttaaaacttactgtaagtcttcccccatgaagtaaaaccttctagggaggagtcttctag 344
Query: 600 aagtgctctgcattgaagccatggctaacgaaaagaggactaggtcacattctcagagag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagtgctctgcattgaagccatggctaacgaaaagaggactaggtcacattctcagagag 284
Query: 660 tatgtgcataatttttaagaactttggaatgagtggaatcattttaatgtttatccatct 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tatgtgaataatttttaagaactttggaatgagtggaatcattttaatgtttatccatct 224
Query: 720 tccttatgaagccacctattata 742
|||||||||||||||||||||||
Sbjct: 223 tccttatgaagccacctattata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1137
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1127
Effective search space: 824964
Effective search space used: 824964
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
