BAC Information

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BAC

Clone NameMSMg01-323L16
Chromosome4 (Build37)
Map Location 25,587,258 - 25,587,931
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323L16.T7 (MSMg01no323_l16.b1)MSMg01-323L16.TJ (MSMg01no323_l16.g1)
ACCAG442069AG442070
length1,3251,307
length of high quality
(start - end)		696 (92 - 787)611 (89 - 699)
definitionCHROMAT_FILE: MSMg01no323_l16.b1 PHD_FILE: MSMg01no323_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:37 2005CHROMAT_FILE: MSMg01no323_l16.g1 PHD_FILE: MSMg01no323_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGATTTANNNNNNNGACAGTGGGCGCTATAGACTCCTATGGGAGAG
GATCCGCGGAATTCTAAACTGTAACCTTTCTTTTTATTCAGAGTTAGAGT
TAATAATAAAGATAGGTGCTACTAGGACCTATCCTTCAATCGCCATAAAG
TTTAAAATTCCTTATTGTTTTTACAAATATGAAGGACATAGAGGTAGTAA
AGGAAGGGACACAAGAGGGACTGGAGGGAGAAGAGGGGGTTATTAAATTT
TAATTGAAATGTATTTGAAATATTTTAAAAAGATAAATTATTACGCATGC
AGATTGTAGGCAATTTTTATATACAACAGAGAATTGTATATTGAAATCGA
TTGAAATGTTAAGAAAGTCGGGATAACTATGAATATTTTCACTGATGGCT
CATAGTGCCCTGTCAAGGATGTGGAAGACTGGCCCTACCTACCATGACAG
ACTTTTTATGAGGCCTCACTATAGAAAAATATGCTCTCCAGCCTGCCCTC
AGGGACTCAGCACCAGAAGTATGTCATCACTAGTCTCCAAACCTCTAAAA
GGTGCTCCCAACCCCATGTATGCTCCTTTGTGTTCTTTCTACCTTTCTGC
CTCTCTGTCTTTCTCTTTCTCTTACTTTCTTTCATGTCTGCACATTAAGG
GGGCCATTTGTTCCCCACTCCACCTCTAATAAATCTCGTTTATAAGAACT
GCTGTGTGGTGTGATCTGACTGTGGCACACTTGGTTTAGACTGCCAAGAT
ACTCTTTCACTAAATTCTAACATTGGTGCTGACGAGATCATAGGCTTTCC
TGGAGCCTGTTACCCTTGCCCACCAGCAGCCCAAGCCAGCTACTGATGAA
TAATCTTTCTCAGTCCGTGTAAATGCTTCCACAAGTCTTTGATACTCTGA
GAAGGAGTGGTACCCACAACTGAACTTTTCCTCTGAATGAGGGTTTTATT
TGAGCAAAATTTCCCCCTCTGGGTCCATTAAAAGATCACCTCTGGGGCCC
CCACTGTGCTGGAAAGAAACCTTGTTGGGGTTGTTCCTCTTCCTTGGGGC
CCCAAACCCTTGGAAACTTGGGTTTATAGTTTGGACTCCCCCCTCCTCCC
CATAAAAAATATTTATCCGACCTTGGTCCCTTGGGGGTTTTTCGAAGATT
TAAAATCCCCCCCAGGGCCTTGAATTTCCTCCATCGGGCCCGNAATTAAT
TTATAGGGGGGCTAGAAACCGGACTCCATTTTGGGGATTTTCATAAAATA
ACCTAGTGAATGATGGGTTGTTTGTNNNNNNNANNNTNNCCCTCCATAAT
TCCTTANATATCATCAATATATATA

NNCCTTGTTTTTTTNNNAGGATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAATTTATGTCCTCTACCA
TCATCATGAGATATGCTTCTTATCCAGGTCTACCTTTTCAGGTGTGTTAG
GGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAG
TGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTG
GCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCC
TCTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTC
TCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTC
AGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGT
GAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGA
AGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGT
GGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGC
CCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCT
GTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGC
CAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAG
ACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAAATG
GCGCCGCCCAAAAGCTCTGCGACTCTCTCGCCCGTCCCAGAAAAAGCTGG
GACTCTGTATTCCACCCGGGTACCCGTGCAGCCTGGCCCCCCCCGGAACC
CGGAAAACAAAAAGATTCCCCCGGGGGCTGTGGGCCAAACTTTTCTTGCC
AGGGAAACCTCCTTCTTTTCCCAGAAAGGGGGGGGGGGCTCTCCCTTTTT
TTAAAAAAAATTCCTCCTTCATATACTGGTGGGGTAGGGGGAAAATTTTA
TACTAGTAACTTTCCNTTTCTATCATAATACNGTCATTTTTTTTTTAATC
NCTCTTTTATTTTCATTATTTTATGATTTANTTTCGCCAATTTCTTCTTG
TATCTATCCAACTTTTTACCCCTCACTAAACTTCTTNATTCATATAAACT
TTTCATNCTCTTTTACTCTACTTCTTCATTCCTATTTCCTTTCTTAATTC
TTAATTATATCTTTCTTCACTTACTCCTTACTTAATACCCATAAACCACT
TCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_l16.b1 MSMg01no323_l16.b1 CHROMAT_FILE:
MSMg01no323_l16.b1 PHD_FILE: MSMg01no323_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:37 2005
         (696 letters)



>mm_chr4_25587058_25588149
          Length = 1092

 Score = 1071 bits (554), Expect = 0.0
 Identities = 654/698 (93%), Gaps = 26/698 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagagttaataataaagataggtgctactaggacctatccttcaatcgccataaagt 60
           ||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 201 agttagagt-aataataaagataggtgatactaggacatatcctttaatcgccataaagt 259

                                                                       
Query: 61  ttaaaattccttattgtttttacaaatatgaaggacatagaggtagtaaaggaagggaca 120
           |||||||||||||||| ||||||||||||||||| |||||||||||   |||||||||||
Sbjct: 260 ttaaaattccttattgattttacaaatatgaagggcatagaggtag---aggaagggaca 316

                                                                       
Query: 121 caagagggactggagggagaagagggggttattaaattttaattgaaatgtatttgaaat 180
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 tgagagggactggagggaggagagggggttattaaattttgattgaaatgtatttgaaat 376

                                                                       
Query: 181 attttaaaaagataaattattacgcatgcagattgtaggcaattttt-atatacaacaga 239
           ||||||||||||||||| |||||  ||    |||||||||||||||| ||||||||||||
Sbjct: 377 attttaaaaagataaatcattac--at----attgtaggcaattttttatatacaacaga 430

                                                                       
Query: 240 gaattgtatattgaaatcgattgaaatgttaagaaagtcgggataactatgaatattttc 299
           ||||||||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||
Sbjct: 431 gaattgtatattgaaattgattgaaatgttaagaaagtcaggataact--gaatattttc 488

                                                                       
Query: 300 actgatggctcatagtgccctgtcaaggatgtggaagactggccctacctaccatgacag 359
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 489 actgatggctcatagagccctgtcaaggatgtggaagactgaccctacctaccatgacag 548

                                                                       
Query: 360 actttttatgaggcctcactatagaaaaatatgctctccagcctgccctcagggactcag 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 549 actttttatgaggcttcactatagaaaaatatgctctccagcctgccctcaaggactcgg 608

                                                                       
Query: 420 caccagaagtatgtcatcactagtctccaaacctctaaaaggtgctcccaaccccatgta 479
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 c-ccaggagtatgtcatcactagtctccaaacctctaaaaggtgctcccaaccccatgta 667

                                                                       
Query: 480 tgctcctttgtgttctttctacctttct-gcctctctgtctttctctttctcttactttc 538
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
Sbjct: 668 tgctcctttgtgttctttctaccttt-tcgcctctctgtctttctctttctcttac---- 722

                                                                       
Query: 539 tttcatgtctgcacattaagggggccatttgttccccactccacctctaataaatctcgt 598
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ------gtctgcacattaagggggccatttgttccccactccacctctaataaatctcgt 776

                                                                       
Query: 599 ttataagaactgctgtgtggtgtgatctgactgtggcacacttggtttagactgccaaga 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttataagaactgctgtgtggtgtgatctgactgtggcacacttggtttagactgccaaga 836

                                                 
Query: 659 tactctttcactaaattctaacattggtgctgacgaga 696
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tactctttcactaaattctaacattggtgctgacgaga 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1092
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1082
Effective search space:   742252
Effective search space used:   742252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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