Query= MSMg01no323_m09.b1 MSMg01no323_m09.b1 CHROMAT_FILE:
MSMg01no323_m09.b1 PHD_FILE: MSMg01no323_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:42 2005
(625 letters)
>mm_chr4_139716200_139717224
Length = 1025
Score = 1093 bits (565), Expect = 0.0
Identities = 568/569 (99%), Gaps = 1/569 (0%)
Strand = Plus / Minus
Query: 57 ccaatcaggacatatcaactcactccagcacagacttccccattttttttttcataaaaa 116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1025 ccaatcaggacatatcaactcactccagcacagacttcccca-tttttttttcataaaaa 967
Query: 117 accactcttgaaaaacacctgccatctgcctttctctgatccagaagaagcactccccac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 accactcttgaaaaacacctgccatctgcctttctctgatccagaagaagcactccccac 907
Query: 177 agcccttgtccctctaggttaataagcctgctttgcagtgagaacttagtgtctgggtgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 agcccttgtccctctaggttaataagcctgctttgcagtgagaacttagtgtctgggtgt 847
Query: 237 gtgccatactgactccgagggcccccatccacacttacatggacaatatacctctgtgtt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gtgccatactgactccgagggcccccatccacacttacatggacaatatacctctgtgtt 787
Query: 297 ctcctgtaagtattggaggtgacatctcttcttcagaacttccatgttggacacgcgtga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctcctgtaagtattggaggtgacatctcttcttcagaacttccatgttggacacgcgtga 727
Query: 357 cacatttaatgagtgcctggtgcacatcatctctattatacaggcttggcttgcccagga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cacatttaatgagtgcctggtgcacatcatctctattatacaggcttggcttgcccagga 667
Query: 417 gcctcccggtcccttcaggtccttttggctgacggaagtcttgttgatcacagtttggga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcctcccggtcccttcaggtccttttggctgacggaagtcttgttgatcacagtttggga 607
Query: 477 cctggatcacagaagctgcacccagattccccaccccctctcataagctccgcctctact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctggatcacagaagctgcacccagattccccaccccctctcataagctccgcctctact 547
Query: 537 ctgtggcaaacacacaatgctgcctctatttctcctctgtatgtttcagagggcgtggtc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctgtggcaaacacacaatgctgcctctatttctcctctgtatgtttcagagggcgtggtc 487
Query: 597 acatctgtgccaccccaggtctttctcag 625
|||||||||||||||||||||||||||||
Sbjct: 486 acatctgtgccaccccaggtctttctcag 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_m09.g1 MSMg01no323_m09.g1 CHROMAT_FILE:
MSMg01no323_m09.g1 PHD_FILE: MSMg01no323_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:42 2005
(314 letters)
>mm_chr4_139543700_139544413
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Plus
Query: 1 gagatgcctgccagcctgcaccctaagggtgtcgccgggagaggattctttgccatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatgcctgccagcctgcaccctaagggtgtcgccgggagaggattctttgccatactg 260
Query: 61 agccccaagaccgcaggtgacctatcagtgcaggcgaatccgggctgttggtgactagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccccaagaccgcaggtgacctatcagtgcaggcgaatccgggctgttggtgactagtc 320
Query: 121 cgtgtagctgctcacacaccttctgcctcagtggctgacgtgggtgtcagtctcacacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgtagctgctcacacaccttctgcctcagtggctgacgtgggtgtcagtctcacacca 380
Query: 181 acatagccccagttctcaggactcgtgggagcttagcagggcccagtgatgggctcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatagccccagttctcaggactcgtgggagcttagcagggcccagtgatgggctcccag 440
Query: 241 tgagcagcatggagagaggaggctgtttgcagagtggcttctcccagaggtggggagaaa 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcagcatggagagaggaggctggctgcagagtggcttctcccagaggtggggagaaa 500
Query: 301 ggtggaagttgggg 314
||||||||||||||
Sbjct: 501 ggtggaagttgggg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
