BAC Information

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BAC

Clone NameMSMg01-323O18
Chromosome4 (Build37)
Map Location 33,841,674 - 33,842,292
singlet/doubletsinglet
Overlap genenone
Upstream geneMdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323O18.T7 (MSMg01no323_o18.b1)MSMg01-323O18.TJ (MSMg01no323_o18.g1)
ACCAG442208AG442209
length1,0861,256
length of high quality
(start - end)
---619 (136 - 754)
definitionCHROMAT_FILE: MSMg01no323_o18.b1 PHD_FILE: MSMg01no323_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:01 2005CHROMAT_FILE: MSMg01no323_o18.g1 PHD_FILE: MSMg01no323_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAAANNNNNNNGACATTGGGCGCTAAGACTACTAAGGGAGAGGATCC
GCGGAATTAAAGGCCTGGAAGGNTCCATTAGGTCCTCTAGAANNNNNANN
NGANNCNAGGNAATCTTTAAAAAACCCCACANGANGAANNGNNNNNCNCN
NGAANAAANAANAANNAAANAANANCAAGGAAANAAAAAANANGGNAGGN
NNAANANANNGNAAAAANNANAGAAGNACAACNNNGCNANAGNAANNNAA
GGACCAGAGCNACANNAAAAAACAAAANAACCAGNACNGGNANACAAAAA
ANNANACAGAAAACNGACAAAGACANCACAGCAGNCNCAAGGAAGCNACC
AGNNCAACAAACANCNAACAGAACAAAANNCNNAAAGAGAAAAAAGNAAG
GTTTTTCCANNNACAGAGACAANAAGGAGAAACGNNAACCACNNGAAACA
CCGGAAGNGAGACCCACGACAANCNGGNANCNNGGNNCANAAAAAAACAA
GAAAAGGNNNCCNCNCNAGGGGACNCNGAACGCAGGACCCCAAGAGNNCA
GNAAGNNCACACAAAGAGNGCNNNNNAAAGAANCCACAGCAACGGAAAGA
AACNCNANCNGAAAANCACNGAACNGNAAANCACGGCNNCAACGNCNGAC
NNNNNNNNNNGNAAAACCAANGNACANACANNCAGNCCAAAACAGAAGAA
AGAAGGCNNNGNGNANANAACAANAGCNGNGNNAACANNNAACGGGAAGG
CCAGNGCAAAGCAACGGNGAAGGGCCANNAAGGAGAANNNAAAAAANCAN
ACAAAAANACAGGCCAGAAAAAGAGGAAACCAANNNGGNGCAAGAAGNNA
GGGGCCCCGGNNAAGGGAAGGGAAAGGCAGAAANNAAAGAACCGAAAGGG
AACCAAAAAACCAANNCCCAACCGGNAANGGGGCCCAAANAAAGCAAAGG
GGNNAAGGGAACAAAAAAACCCCGGGGAANGGAAACCAGCAAAAACGGAA
AAGAAACCGAAAGCCNGGGAAGCCACCGGGCAAAGAAAAAAAGGCCAACG
GGGCCCCAAGGCCAAAAGGAANNNNAACAGGGGACC
NCCCTCTTNNNNNNNAATCATGGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATAAGTGTCTGAGCAGT
TCAGNCCCAAGAGCAATCAGGCTTTTGCTGTGTAAGCTCCTGGGAAGTCA
GGGTGTGTCCGTCAGGCCTGTGCCACAGTGTGGTGCACAGAAAGGGTTTA
GCCTGACCAGCATTTCAGCTAGTCATATAACGGTGGAGGCTCTGATTCTC
CTAATCGCAGTTTCCTCATCTCTAAAATAGCATCTACAGCAGTTTCACAG
GATCAAGTGACATGAGACATGGATACAAGGCATCCGGATCATAGGAGGCT
GTTAGTTCACTCGCCAATAAATGAGTTGACAGCATTGGACATGTTGTTCT
TTTGTTTAACACCTTTTAGTGATAAGCCTTTAGTAATTACTAGTAGTAAT
TTTTAATTCTTGCTTTTTGGTTACACAACTACAGGACGCCATGGACTTGA
AGTTGTTTTTAATTAGTTGAGTATATATGGATTACTTTTATAAGTTCAGG
TTGAGATGAAGCCAAAAGTTCTGCTCATATGAAGGGTAATTAGCAGACAA
CTCAAACCATGGCTGACACAGCGTGTTCACGGAGAAGAGGAAGGCGTCCA
TCTTGGCAGGGCCAGAGCAGAGATAGGCACTGCCTTTTGAAAGGCCTTGA
AAGGGAAAGCAGAGAAATGGAGGAGTGTGGTTCTGTTGTTTGTGGATGGG
AGAGCAAGAAGGCATGTGAGGGGTGTATGGTCCTGGTGGTAAGTGGGCAG
AGGGAAAGCAACACGGGAGACTAACTCTTGACCAGGTTGGAGAGGATTCT
GAACTTTCTCAGAAAGAAGCCACGGCTACGGCAAGATTTCAAACAAAATA
AATTTAAAAAACTTCTCTTTCTATTAGGCCAATCAATTGTGCTGGAACAA
TTTTTGTAAAAGCTGAAAAATTATTTTCCTGCAAATTCTTCCCAAAAAAT
GGAAAACCAGTCCACTTGAGGGACAATTGAAATAAAAAAATTTGGGAGGC
CAAAACTTTCCCCCGGGAACTCTGGAATCTCTCCTTAAAATTTCTTAATC
AATTACAATCCTTCTTTTGGGTTTGCACGGTTTTTCTCTCTCTCAAAAAC
CTGGGAAAAAGAGGCAAAAGAATCCCTCATTATTCTGGGTGTGTTTTCTC
CAAACAATCCTTAAGGTGAATTCGAAGAAAATTCTCAATAATAATTTTTC
CTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_o18.g1 MSMg01no323_o18.g1 CHROMAT_FILE:
MSMg01no323_o18.g1 PHD_FILE: MSMg01no323_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:01 2005
         (619 letters)



>mm_chr4_33841474_33842492
          Length = 1019

 Score = 1104 bits (571), Expect = 0.0
 Identities = 607/623 (97%), Gaps = 8/623 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcctgggaagtcagggtgtgtccgtcaggcctgtgccacagtgtggtgcacagaaagg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gctcctgggaagtcagggtgtgtccgtcaggcctgtgtcacagtgtggtgcacagaaagg 260

                                                                       
Query: 61  gtttagcctgaccagcatttcagctagtcatataacggtggaggctctgattctcctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagcctgaccagcatttcagctagtcatataacggtggaggctctgattctcctaat 320

                                                                       
Query: 121 cgcagtttcctcatctctaaaatagcatctacagcagtttcacaggatcaagtgacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cgcagtttcctcatctctaaaatagcatctacagcagtttcacaggatcaagtgagatga 380

                                                                       
Query: 181 gacatggatacaaggcatccggatcataggaggctgttagttcactcgccaataaatgag 240
           |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 381 gacatgaatacaaggcatccggatcacaggaggctcttagttcactcgccaataaatgcg 440

                                                                       
Query: 241 ttgacagcattggacatgttgttcttttgtttaacacctttta----gtgataagccttt 296
           |||||||||||||||| |||||||||||||||||||||    |    |||||||||||||
Sbjct: 441 ttgacagcattggacacgttgttcttttgtttaacacc----aacaagtgataagccttt 496

                                                                       
Query: 297 agtaattactagtagtaatttttaattcttgctttttggttacacaactacaggacgcca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 agtaattactagtagtaatttttaattcttgctttttggttacacaactacagaacgcca 556

                                                                       
Query: 357 tggacttgaagttgtttttaattagttgagtatatatggattacttttataagttcaggt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggacttgaagttgtttttaattagttgagtatatatggattacttttataagttcaggt 616

                                                                       
Query: 417 tgagatgaagccaaaagttctgctcatatgaagggtaattagcagacaactcaaaccatg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagatgaagccaaaagttctgctcatatgaagggtaattagcagacaactcaaaccatg 676

                                                                       
Query: 477 gctgacacagcgtgttcacggagaagaggaaggcgtccatcttggcagggccagagcaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gctgacacagcgtgttcacggagaagaggaaggcgtccatcttggcagggccagagcaga 736

                                                                       
Query: 537 gataggcactgccttttgaaaggccttgaaagggaaagcagagaaatggaggagtgtggt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gataggcactgccttttgaaaggccttgaaagggaaagcagagaaatggaggagtgtggt 796

                                  
Query: 597 tctgttgtttgtggatgggagag 619
           |||||||||||||||||||||||
Sbjct: 797 tctgttgtttgtggatgggagag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)