BAC Information

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BAC

Clone NameMSMg01-323P21
Chromosome4 (Build37)
Map Location 47,836,837 - 47,994,761
singlet/doubletdoublet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323P21.T7 (MSMg01no323_p21.b1)MSMg01-323P21.TJ (MSMg01no323_p21.g1)
ACCAG442259AG442260
length1,2321,233
length of high quality
(start - end)		669 (83 - 751)637 (148 - 784)
definitionCHROMAT_FILE: MSMg01no323_p21.b1 PHD_FILE: MSMg01no323_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:11 2005CHROMAT_FILE: MSMg01no323_p21.g1 PHD_FILE: MSMg01no323_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,836,837 - 47,837,505)(47,994,125 - 47,994,761)
sequence
NCCACTTTNNNNNNCTCATTGGCCCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTNCAGCAAGTTTGCTTGCTTTAAAGACTAAAATCCTAACCCTGG
ACAGACTTTCTCTCCGCTTCTGGCTGCCTCTTACTTAGGAAAAGTTTGAT
AAGTCTCATGATGTCTTTGACTGAATTTTAAAACCATATTTTTCAGACAT
ACTAATAACAGTTGTATGTAGCGAGGAAGGAGAGAAATGCTTCTAGCCAC
GGGGTATAAATAGCATGCTGATCTCCGTCTTCAGAAAGGGACCAGAAGTG
AGACTCCAGCAGGCGGAGTGACTGCACGTGAGGGAGCAGCCTCTTTGCAC
ACATGGGCACACATTGCCGAAATGGGATTGGAGTCGTCGCTGCCATCTTC
TCCACTAACGCCCACCGCCGAATGACATCACTGCCAAAGCCCAATTAGCT
CAGAGAAGACCCTGGCACTCAGTGATATTTCTTCAAGATGGCATGAAATT
CCAAATATAAATTGGGTCCGCACTGGGCGATGATTCAAGAAATCGTATTG
GCCAGTTCACAAGACTAGAAATATCCATTAGCTCAGCTTTAGAAAGTGGA
TTACCCCCTGCAAAGACAGGGGTATAATTACCTCCCTGGATCCCGAGGGA
ACCTCTAGAAACAGAAAGGAAGAGTTTCTTTGCCAAAGGTGCGGTCATAT
CATAAACTGTACTTACAGGATGAAAGGAAAGTTCACAAAGATGCATCGTC
TTCCTCGGCTGCCTTATCTTTTTAGGAAAACTGTTAACACTTAAAATAGC
AAAGTTCTCACATTTGAATTGCTTTTTACCACTCACTTGCATGTCCTTTT
GCGATCTATATAATTCTTGTTGCTATTTTGTAAAAGAAGCCTAAAGTTAA
GAAAGGTACACGTTTGAGGTTATTTGAGAGCAGGGATTTATTTCGCTCCT
CGTGTCCATCACCATGTGTTCTAGAATGGAACCGTCCCAAGCACACTTCA
AATCCCGTGCAATGGGAAAAAATTAAACAGAATTTGGCCAGCCCCTTAAT
TAACAGCAGCAGGGACTCCCGGCCGTTTTTTTTTTGTTAGTGCGGACATA
TAACCGGCTTTGGGCAAAAGGTTAACCTGGTAATTGGTTTAAAAAATCTC
GGCGGTTTGTATTAAAACCCCACACATTTTAAAAAATCTTTTTCTTCCAG
GGGGTTCTTTTTTGGTAAAAAACATCGCCGAA

NNCCCGGCCTTNNNNNATATGAAGTGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAAAGCCCCGAAAG
GAAGNGAAAAAATCCCTCAGAACATTTAAAAGCCTCCCCCGNAGGGNCTT
GTGATTGGGGATTTTGGGCACCTAGAGGAAGAGAAAGTTTTGAAAGGCCA
CAAAAGGGATGGAATAGATGTTGATGAGAGGCAAACGAGGCACTCACTGG
GGTAATGAGGAGACAAACACAGCTAGGAATTCAGAGACAAATCAAGAAAT
GAAAGCCCAACTTCACAGTTTACCCCTCCCCCACCCACATCAATTTACTG
AGAATTGAATTCCAGAGCATTTCAGCACCTTACTCATGAACTTGTCGCTG
TTCTAACTCCTGCTCTTTTTTTCTGAATGAAAATAGGTATGATGATTGAT
TATAAAGTTAATTTAGGGAGTTAGTTAAATCTGAAACGTGACCCACTCAA
GAGCCCAGTGCCTGTGCATGTCGGACAAACACCCATGGTAGTGAGCAAGC
GAGTGAGTCATGAGAAATGATTCTGGAGCAGTCTGTATCTCAGAGTGTGT
GTAGTGGGTAAGAATATTTTGTCAAATGTTTAAACAATTACAGTTTTGCA
TATGAAAGTTGAGTGTGTGGTTTATGTGTAATATCTGCCAGTTCACTCAT
TATCAAAGAGAAAGTCATTGCTACCATGATCATTTTGGAATGGAACTCCA
GGGCTTCCTGCAGACGGCTCAGCAGATAAGAGCACTGGCTGCTCTTCCAG
AGGACTCCAGTTCAATTCCTAGCACCCACATAGCAGCTCACAACTGTGTC
TAACTCCAGTTTCAAAGAACCTGACACCCGCACACCGACATATAAGCGGG
AAAGCATCTATGCACATAAAAATAAGTCACTCTGGAAAAGAAGGAAAGAA
AAAGAAAGAAAGAAGGGGAGGGAGGTAAGGAGGGGAGGAAGTGAGGAAGA
AAGAAAGGAATAAGGCCGGCCTATGGTTTTGTTATGTGAAACCACAGGTT
CAAAAGAACCGGTCATTTCTGATAAAGGAAGGAGAGGATTTAAGGGGTGT
TTCCCAGGGTTAAAAAATCCCCAAAATCTCAAATATAATTCCTAAAATTC
CGGGCGTCCCTTAAAAAGGAAGTTTGAATTTTGGAGAATCTTTTCCTTCA
AAAGTGGTGAGAGGGGGTCCCCCCCCCGCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_p21.b1 MSMg01no323_p21.b1 CHROMAT_FILE:
MSMg01no323_p21.b1 PHD_FILE: MSMg01no323_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:11 2005
         (669 letters)



>mm_chr4_47836637_47837705
          Length = 1069

 Score = 1239 bits (641), Expect = 0.0
 Identities = 662/669 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatcctaaccctggacagactttctctccgcttctggctgcctcttacttaggaaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctaaaatcctaaccctggacagactttctcttcgcttctggctgcctcttacttaggaaa 260

                                                                       
Query: 61  agtttgataagtctcatgatgtctttgactgaattttaaaaccatatttttcagacatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttgataagtctcatgatgtctttgactgaattttaaaaccatatttttcagacatac 320

                                                                       
Query: 121 taataacagttgtatgtagcgaggaaggagagaaatgcttctagccacggggtataaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taataacagttgtatgtagcgaggaaggagagaaatgcttctagccacggggtataaata 380

                                                                       
Query: 181 gcatgctgatctccgtcttcagaaagggaccagaagtgagactccagcaggcggagtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgctgatctccgtcttcagaaagggaccagaagtgagactccagcaggcggagtgac 440

                                                                       
Query: 241 tgcacgtgagggagcagcctctttgcacacatgggcacacattgccgaaatgggattgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcacgtgagggagcagcctctttgcacacatgggcacacattgccgaaatgggattgga 500

                                                                       
Query: 301 gtcgtcgctgccatcttctccactaacgcccaccgccgaatgacatcactgccaaagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcgtcgctgccatcttctccactaacgcccaccgccgaatgacatcactgccaaagccc 560

                                                                       
Query: 361 aattagctcagagaagaccctggcactcagtgatatttcttcaagatggcatgaaattcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattagctcagagaagaccctggcactcagtgatatttcttcaagatggcatgaaattcc 620

                                                                       
Query: 421 aaatataaattgggtccgcactgggcgatgattcaagaaatcgtattggccagttcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatataaattgggtccgcactgggcgatgattcaagaaatcgtattggccagttcacaa 680

                                                                       
Query: 481 gactagaaatatccattagctcagctttagaaagtggattaccccctgcaaagacagggg 540
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 681 gactagaaatatccattagctcggctttggaaagtggattaccccctgcaaagacagggg 740

                                                                       
Query: 541 tataattacctccctggatcccgagggaacctctagaaacagaaaggaagagtttctttg 600
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 741 tataattacctccctggatcctgagggaacatctagaaacagaaaggaagagtttctttg 800

                                                                       
Query: 601 ccaaaggtgcggtcatatcataaactgtacttacaggatgaaaggaaagttcacaaagat 660
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaaaggtgtggtcatatcataaactgtacttacaggatgaaaggaaagttcacaaagat 860

                    
Query: 661 gcatcgtct 669
           |||||||||
Sbjct: 861 gcatcgtct 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no323_p21.g1 MSMg01no323_p21.g1 CHROMAT_FILE:
MSMg01no323_p21.g1 PHD_FILE: MSMg01no323_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:11 2005
         (637 letters)



>mm_chr4_47993925_47994961
          Length = 1037

 Score = 1154 bits (597), Expect = 0.0
 Identities = 627/637 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtgattggggattttgggcacctagaggaagagaaagttttgaaaggccacaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cttgtgattggggattttgggcacctagaggaagagaaagttttgaaaggccacaaaagg 778

                                                                       
Query: 61  gatggaatagatgttgatgagaggcaaacgaggcactcactggggtaatgaggagacaaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 777 gatggaatagatgttgatgagaggcaaacgaggcactcacaggggtaatgaggagacaaa 718

                                                                       
Query: 121 cacagctaggaattcagagacaaatcaagaaatgaaagcccaacttcacagtttacccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cacagctaggaattcagagacaaatcaagaaatgaaagcccaacttcacagtttacccct 658

                                                                       
Query: 181 cccccacccacatcaatttactgagaattgaattccagagcatttcagcaccttactcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cccccacccacatcaatttactgagaattgaattccagagcatttcagcaccttactcat 598

                                                                       
Query: 241 gaacttgtcgctgttctaactcctgctctttttttctgaatgaaaataggtatgatgatt 300
           ||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||
Sbjct: 597 gaacttgtcgctgttctaactcctgatcctgctttctgaatgaaaataggtatgatgatt 538

                                                                       
Query: 301 gattataaagttaatttagggagttagttaaatctgaaacgtgacccactcaagagccca 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 537 gattataaagttaatttagggagctagttaaatctgaaacgtgacccactcaagagccca 478

                                                                       
Query: 361 gtgcctgtgcatgtcggacaaacacccatggtagtgagcaagcgagtgagtcatgagaaa 420
           |||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 477 gtgcctgtgcatatcggacaaacacccatgatagtgagcaagtgggtgagtcatgagaaa 418

                                                                       
Query: 421 tgattctggagcagtctgtatctcagagtgtgtgtagtgggtaagaatattttgtcaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgattctggagcagtctgtatctcagagtgtgtgtagtgggtaagaatattttgtcaaat 358

                                                                       
Query: 481 gtttaaacaattacagttttgcatatgaaagttgagtgtgtggtttatgtgtaatatctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtttaaacaattacagttttgcatatgaaagttgagtgtgtggtttatgtgtaatatctg 298

                                                                       
Query: 541 ccagttcactcattatcaaagagaaagtcattgctaccatgatcattttggaatggaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccagttcactcattatcaaagagaaagtcattgctaccatgatcattttggaatggaact 238

                                                
Query: 601 ccagggcttcctgcagacggctcagcagataagagca 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccagggcttcctgcagacggctcagcagataagagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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