BAC Information

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BAC

Clone NameMSMg01-324A05
Chromosome4 (Build37)
Map Location 29,468,169 - 29,468,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324A05.T7 (MSMg01no324_a05.b1)MSMg01-324A05.TJ (MSMg01no324_a05.g1)
ACCAG442275AG442276
length637723
length of high quality
(start - end)
63 (43 - 105)601 (78 - 678)
definitionCHROMAT_FILE: MSMg01no324_a05.b1 PHD_FILE: MSMg01no324_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:13 2005CHROMAT_FILE: MSMg01no324_a05.g1 PHD_FILE: MSMg01no324_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATCCGCG
GAATTCAAATAATTCCATAAATAAATAAATAAATAAATAAATAAATAAAT
AGAATAAACATTAAAAAAAATTTTAAAATAAAAATTTGGTTTTTTTTGGG
TTTTTTGGTAGTCAAGGGTTGGTGGGTGGCACAAGCCCTTTAATTCCCAG
NCAACTTTGTGGAAGGGCAGAATTGCAAGGTCCAGAATTTTCTTGAAATT
CCTAAGTTCAAGCCCGGGTCTTTAAAAATTTAAATTCCCCGGAAAATCCT
GGGTAGAACAAAAAAAAACCTGGTCTTTAAAAACCCCCCCCTTCCCCCCT
GTAAAAAAAAAGGGGATTTTAAAAAAACAATATCCCCCCTTTTTTTTTTT
CGCCCCTTGTCCGCTATCGTCAAGTTATACATCNGGGTGGGGGGGCTTCT
GTATTTATATCTTCCTTCTTATTACTTTGCAATTTATTTTATTTTTTACT
TCCTTTATCTCACCCATATTTTCTATTTTTTCCCCCCCCCCCTTTTTATT
TCAATTCTTACTCACTTTTTTCTCCCCCACCATGCTATTTATCTCCTAAA
ATCATACACATTACTTCTTCTAATTTATTAGCTTTTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGACTGACATATCTGCTAATC
ATTGCCATGTTTTAATAAATTTAATAGTCATGACTATCTCTCTACTTTGT
GAATAATCCACACTCTAACATCTTAAGTCTTCTGGTGTGACATATTACTT
TGGCAAATGATAATTTCAGATGTGAAAAGTTATACATTTATCTACACATT
GACGCAGTGAATTCAAAGGGTATGTATGACTTTAGATGAAATTTATAAAG
GAAGCCTGAACTTTCATGAATAAACAATTTCAGTTGTCCAATATGTCTTT
CCAAGAAAGCATATAATAAAATGGAAATAGTATTAATAATAATAATAATA
ATAATAATAATAATAACCACAATAAATTTTAATATAAGCAAAGAAAAACA
TATCATTTATAGTTACTGACTCACTTTAAACATCATGTCTACAATTACAT
ACAACTTGATGGGTATTATTTCTTGAACTCTAGTCAAGTCATACTACAAA
AATTACCTTATGGATATTTCACCTGTTTAACACTTAATAACAAATTATAT
TCTGATTTAGCAACTTTCCTGAGCATCTGTTTCTATGTCCAAAAACATAT
GCTAATCTCTAAGTAGATCTTCTGCCAACATTTGTATTTTAAAAATAAAC
TTGCACAGCAAATAGAAAAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_a05.g1 MSMg01no324_a05.g1 CHROMAT_FILE:
MSMg01no324_a05.g1 PHD_FILE: MSMg01no324_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:13 2005
         (601 letters)



>mm_chr4_29468169_29469169
          Length = 1001

 Score =  841 bits (435), Expect = 0.0
 Identities = 473/493 (95%), Gaps = 12/493 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgactgacatatctgctaatcattgccatgttttaataaatttaatagtcatgactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttgactgacatatctgctaatcattgccatgttttaataaatttaatagtcatgactat 422

                                                                       
Query: 61  ctctctactttgtgaataatccacactctaacatcttaagtcttctggtgtgacatatta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctctctattttgtgaataatccacactctaacatcttaagtcttctggtgtgacatatta 362

                                                                       
Query: 121 ctttggcaaatgataatttcagatgtgaaaagttatacatttatctacacattgacgcag 180
           |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct: 361 ctttggcaaatgataatttcagatgtaaaaagttatacatttatccacacattgacacag 302

                                                                       
Query: 181 tgaattcaaagggtatgtatgactttagatgaaatttataaaggaagcctgaactttcat 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 301 tgaattcaaagggtatgtatgacattagatgaaatttataaaggaagcctgaactttcac 242

                                                                       
Query: 241 gaataaacaatttcagttgtccaatatgtctttccaagaaagcatataataaaatggaaa 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 gaataaacaatttcagttgtccaatatgtctttccaagaaaacatataataaaatggaaa 182

                                                                       
Query: 301 tagtattaataataataataataataataataataataaccacaataaattttaatataa 360
           |||||||||||||||||||| |||||||||||||||            ||||||||||||
Sbjct: 181 tagtattaataataataatagtaataataataataa------------attttaatataa 134

                                                                       
Query: 361 gcaaagaaaaacatatcatttatagttactgactcactttaaacatcatgtctacaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gcaaagaaaaacatatcatttatagttactgactcactttaaacatcatgtctacaatta 74

                                                                       
Query: 421 catacaacttgatgggtattatttcttgaactctagtcaagtcatactacaaaaattacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  catacaacttgatgggtattatttcttgaactctagtcaagtcatactacaaaaattacc 14

                        
Query: 481 ttatggatatttc 493
           |||||||||||||
Sbjct: 13  ttatggatatttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)