CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGCCCTCAATACAAGTTTCATAGTATTTGGTAGAAAAGTCTTA
TGTATGATATTTCCTACACTGAATTTCCAGGCTGTGGCTAGCTCTTGCAT
GTGAACTAATGCTTTTCTCCGTTTTTACATAATTTACTTTGAAGGAGTAT
GTAATTGTTCCTTGTATAATAACTGATACTATGACAGGGAAATTATGCAA
AGAGCCATAAGACAAACTAGAACATAAAAATCACTTTAGAACCGTATACA
GAACACTTAAGCATGCATAGCCAAAAGGAAAATGTGAGTTCAACCATAAT
TTACCTTTAGGGAGGCAGGTTAGAGGACACCTTAAAAGCATGACAGCTTT
GAGTTAGTCACTGGATAATGACACCGCTATCTAGCGAGTACTCAGTATTT
TATATACACATTTCAATCTATCCCAACAACTTAGGTTGGGGGAAATATCA
CTGCATGAAATACAAATAGGGATTAGGAAATGGGACCAGAAGGTGTTATC
AATCCCCTGATACTTAATTAAATTAATGACAGATCTGAAAGGTTCAAATC
TCCTAGACTGCAGTGCCTTAAAAAATGAGGTCACGGGCTGGGGAGATGAA
TCATCACTTGAGAGTGCTTCCTGCTCTGGCAGAGGACCTGAGTTCCTAAC
ACCTGTGTCAGGCGTCTCACTTGCAGAGTCTGAA

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGTTCAACAAGCTGAAGTGC
CCAAGTAAGAATGCCTCAGTCCCACTTGGNGAGAGAGAAGAAAGCAATCA
CAAGTGGGNGAGGGGGGAGGGAGAGAGGGACTTGGGAGGGAATGTGNNNN
NTTNTTTNNTNNNTTTTTTNTTTTTNTTTTTNTTTTTNNTTTTTTTTTTT
CCTTTTTTTTTTTCTTTTTTTGTTCTTTCCTTTTTTTTTTTTTTTCTTTT
TTTTTCCCCCGCCCTTTTCCGCTTTCCTTCTTTTTTTTTTTCCTCCTTCC
TCTGCTTCTCTTTTTCTTTTTTTTTTCTTTTTTTTTCTTTTCTTCTTTTT
TCTTTTTTCTCTTTTCTTTTCTCCCCTTCCTCTTTTTTTTTTTTTTCCCC
CCCCCCCTTTCTTTGCTCTTTTCTCTCTCTTCTTCTTTTTTCTTTTCCTC
TTTTTTCCTTTTTCTCTTTTCTCCTCTTTTTTCCCTCTTTTTCTCTTTTT
TTCGCCCCTCTCCCTTTCTCCCCTCTGTTCTTTTTTCTTTTTTTCTTTCT
TGCCCCTCTTGCTCTTTATATTTCTTTTTCTTCTTCTCTTCTTTCTGCCT
TTTTTCTCTCTCTCTTTTTTTTTCCTCCTTTTTCCTTTCCTTTTTTCCTC
CCTTTTTTTNGTTCGTCGCTGTTCTCTTGTCTTTCTTCTTTCTTTCTTTC
CCCACTTCTCCTTCTTCCTTCTTTTTTCCCTCCTTTTTCCCGCTTTTCGT
TCCTGTCATTTTTTTTCTTTTATTTCTTTTCTTCCTCTTCCTTCTCTTTT
TTATCTCTTTTTTCCT

Query= MSMg01no324_a16.b1 MSMg01no324_a16.b1 CHROMAT_FILE:
MSMg01no324_a16.b1 PHD_FILE: MSMg01no324_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:15 2005
         (689 letters)



>mm_chr4_34837081_34838169
          Length = 1089

 Score = 1239 bits (641), Expect = 0.0
 Identities = 670/685 (97%), Gaps = 9/685 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgccctcaatacaagtttcatagtatttggtagaaaagtcttatgtatgata 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcattgcactaaatacaagtttcatagtatttggtagaaaagtcttatgtatgata 730

                                                                       
Query: 65  tttcctacactgaatttccaggctgtggctagctcttgcatgtgaactaatgcttttctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttcctacactgaatttccaggctgtggctagctcttgcatgtgaactaatgcttttctc 670

                                                                       
Query: 125 cgtttttacataatttactttgaaggagtatgtaattgttccttgtataataactgatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cgtttttacataatttactttgaaggagtatgtaattgttccttgtataataactgatac 610

                                                                       
Query: 185 tatgacagggaaattatgcaaagagccataagacaaactagaacataaaaatcactttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tatgacagggaaattatgcaaagagccataagacaaactagaacataaaaatcactttag 550

                                                                       
Query: 245 aaccgtatacagaacacttaagcatgcatagccaaaaggaaaatgtgagttcaaccataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaccgtatacagaacacttaagcatgcatagccaaaaggaaaatgtgagttcaaccataa 490

                                                                       
Query: 305 tttacctttagggaggcaggttagaggacaccttaaaagcatgacagctttgagttagtc 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttcacctttagggaggcaggttagaggacaccttaaaagcatgacagctttgagttagtc 430

                                                                       
Query: 365 actggataatgacaccgctatctagcgagtactcagtattttatatacacatttcaatct 424
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 429 actggataatgacactgctatctagcgagtactcagcattttatatacacatttcaatct 370

                                                                       
Query: 425 atcccaacaacttaggttgggggaaatatcactgcatgaaatacaaatagggattaggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atcccaacaacttaggttgggggaaatatcactgcatgaaatacaaatagggattaggaa 310

                                                                       
Query: 485 atgggaccagaaggtgttatcaatcccctgatacttaattaaattaatgacagatctgaa 544
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atgggaccagaaggtgtcatcaatcccctgatacttaattaaattaatgacagatctgaa 250

                                                                       
Query: 545 aggttcaaatctcctagactgcagtgccttaaaaaatgaggtcacgggctggggagatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aggttcaaatctcctagactgcagtgccttaaaaaatgaggtcacgggctggggagatga 190

                                                                       
Query: 605 atcatcacttgagagtgcttcctgctctggcagaggacctgagttcctaacacctgtgtc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 189 atcatcacttgagagtgcttcctgctctggcagaggacctgagttcctaacacctgtg-- 132

                                    
Query: 665 aggcgtctcacttgcagagtctgaa 689
                  ||||||||||||||||||
Sbjct: 131 -------tcacttgcagagtctgaa 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)