Query= MSMg01no324_c09.b1 MSMg01no324_c09.b1 CHROMAT_FILE:
MSMg01no324_c09.b1 PHD_FILE: MSMg01no324_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:23 2005
(678 letters)
>mm_chr4_103202927_103204004
Length = 1078
Score = 1230 bits (636), Expect = 0.0
Identities = 668/686 (97%), Gaps = 12/686 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtcatgtacccttttgtgcattaattcagtgaagactttgagacactggggag 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcagtcatgtactcttttgtgcattaattcagtgaagactttgagacactggggag 252
Query: 65 ggaaacttaggtcaacttcataaaagactgatgtgaaaaccagctgttaaattattcttt 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 253 ggaaacttaggtcaacttcataaatgactgatgtgaaaaccagctgttaaattattcttt 312
Query: 125 taaaataggaactacacatctttcagcagtcaaaatatttggtatactgtctggaagatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taaaataggaactacacatctttcagcagtcaaaatatttggtatactgtctggaagatc 372
Query: 185 tttttgttttgcatcctgggaagctgaattaggcttggtgaagaggaattagaataaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttttgttttgcatcctgggaagctgaattaggcttggtgaagaggaattagaataaaag 432
Query: 245 aacacacacacacacacac------------tggagtgtttttaactatttgttattttt 292
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 aacacacacacacacacacacacacacacactggagtgtttttaactatttgttattttt 492
Query: 293 atcttctgaactctgcaaaattactcttcagttaatattgtctatagaggcattgggcat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atcttctgaactctgcaaaattactcttcagttaatattgtctatagaggcattgggcat 552
Query: 353 tagtggacagatttttatccatttaccagcatccccttttttttctgggaatagacttta 412
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 tagtggacagatttttatccatttaccagcatccccttttttttctgaaaatagacttta 612
Query: 413 tttttagaattccataaatccctgttgcttggctgcactctatggtttccaggagtcact 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttttagaattccataaatccctgttgcttggctgcactctatggtttccaggagtcact 672
Query: 473 atcttctctaatgacgttgtctaataattgttgattggcccatgagtgggcattcgatat 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 673 atcttctctaatgacgttgtctaataattgttgattggcccatgagtgggcatttgatat 732
Query: 533 aagtctaacacataagagcactggctttctgtttttagaattaaaactagaaaaatgtct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aagtctaacacataagagcactggctttctgtttttagaattaaaactagaaaaatgtct 792
Query: 593 caattctccattctacaaaggaaaggcagaggatggggaaatcagccatctatgtttcta 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 caattctccattctacaaaggaaaggcagaggatggggaaatcagccatctatgtttcta 852
Query: 653 tatttcctccgatgaagatgaagaaa 678
||||||||| ||||||||||||||||
Sbjct: 853 tatttcctctgatgaagatgaagaaa 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_c09.g1 MSMg01no324_c09.g1 CHROMAT_FILE:
MSMg01no324_c09.g1 PHD_FILE: MSMg01no324_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:23 2005
(651 letters)
>mm_chr4_103365241_103366287
Length = 1047
Score = 1116 bits (577), Expect = 0.0
Identities = 630/651 (96%), Gaps = 7/651 (1%)
Strand = Plus / Minus
Query: 1 agcttcagggcttgcttctttcttttctttttgttttttaagatttatttattatattta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 877 agcttcagggcttgcttctttcttttcttt---ttttttaagatttatttattatgttta 821
Query: 61 tatgaatacactatagttgtcttcagacacaccagaagaggacatcagattccattacag 120
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 820 tatgaatacactatagttgtcttcacacacaccagaagaggacatcatattccattacag 761
Query: 121 atagttgtgagccaccatgtgattgctgggaattgaactcaggacttctggaagagcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atagttgtgagccaccatgtgattgctgggaattgaactcaggacttctggaagagcagt 701
Query: 181 cagtgctcttaaccactgagccatctctctagccccccagggcttgattcttttgctata 240
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 700 cagagctcttaaccactgagccatctctccagccccccagggcttgattcttttgctgta 641
Query: 241 atgcaatttcccttcactctgctttgtgggagaagctaaaacattgaatttactcagtac 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 640 atgcaatttcccttcactctgctttgtggaagaagctaaaacattgaatttactcagtac 581
Query: 301 ttgtcgtatgcaaggcttgacttgctctgttttaacccttaccaaagcgtaatccacata 360
|||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct: 580 ttgttgtatgcaaggcttgacttgctttgttttaacccttaccaaagcatagtccacata 521
Query: 361 gtatccaattcgcagatttaaatgtaatcccaagctctttagtaaattcatagcgccatg 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 gtatccaattcgcagatttaaatgtaattccaagctctttagtaaattcatagcgccatg 461
Query: 421 caattaattatgctatgactgttgatgaggatagctttagatcaaagcagatctcttatg 480
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 c----aattatgctgtgactgttgatgaggatagctttagatcaaagcagatctcttatg 405
Query: 481 acacctaggtcaatccagtctccatgcccagtgccagccactcactttgttgcttactgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acacctaggtcaatccagtctccatgcccagtgccagccactcactttgttgcttactgc 345
Query: 541 ctctgcagagttgcttttctggatgttcttacaaggagaactcgatagtatgatatgtta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctctgcagagttgcttttctggatgttcttacaaggagaactcgatagtatgatatgtta 285
Query: 601 cacataggcttcactttactaagtagagtagttttcaggctcacccatggt 651
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cacatgggcttcactttactaagtagagtagttttcaggctcacccatggt 234
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1047
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1037
Effective search space: 664717
Effective search space used: 664717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
