BAC Information

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BAC

Clone NameMSMg01-324D23
Chromosome4 (Build37)
Map Location 106,728,374 - 106,897,332
singlet/doubletdoublet
Overlap geneMrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3
Downstream geneLrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324D23.T7 (MSMg01no324_d23.b1)MSMg01-324D23.TJ (MSMg01no324_d23.g1)
ACCAG442452AG442453
length744748
length of high quality
(start - end)		641 (49 - 689)544 (75 - 618)
definitionCHROMAT_FILE: MSMg01no324_d23.b1 PHD_FILE: MSMg01no324_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:31 2005CHROMAT_FILE: MSMg01no324_d23.g1 PHD_FILE: MSMg01no324_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,896,693 - 106,897,332)(106,728,374 - 106,728,916)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGG
AATTCCTCAAATATTTGCCTACCGATGGGGCCCTAGAGGGTGGCCGTATC
TAGAGGGAGGCAGAGAATGAAGGGTTTAGTGAGAAGAGATGGTCAAACAG
GAAGACAGAACAGTGTGCCATTATGGGAACTAAGGAAAACAAGAATGACC
AAGAAAGCTTCTGAGCAGAAAAGGCACAGGAGACAGACACAGGCAACTTG
ACTGGAAGTAGAAAAGGCAGTCAGGAAAACCTAATGTGTGGGGGCTGATT
GTCAAAAAAGACTGAGGCATGACCCATGCTGGTATGCTATGAGGAACAAG
CCCAAGAAGAAAACAGTCTGTGGCCTCAGAGATCCAGTCACCCCTGTCCT
TACCTTGCATGACAGTAGTGGCCAGGCCAGCTCAACCATCATAGCTCACA
AGAGGAAGCCAGTGTCCAACTCTGCTTCCAGACTTGTTGAGGTGGCTAAA
AACTGACCCCACAAGGAACAGCCAAGGCTATGGGACAGCTTGAGATGCCT
CTTGGGAGACTATCCCCAGGTTGTAAAGGAAGGCTTTCCTGAAACCAAGG
GAACAAATACCTTTTCTGGATCTAGACTGACCTGAAAAAAAATCTGAAAA
TCTGGTAGAATCAGCTTTGCAGAGCCTCCGCTGTCAGGAAGGAGCCAGTC
CCTCATTCTTATAACATGCAGACTCTGGCTCTTATGTAGGGCTG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATGTGTGCAAAAGCATAGCTGCCC
CAGGACCTGGTCTTTAAGAGGCAAGAAGGCATACGGTGTGGTCTGCATAC
AGCACATACCAATGTCTCACAGACAATCTCACACCAATGCAATACTAAGA
CTTTATTTCCATAGAGACACCAGACCGAGGGAGAGTGGAAGGCTCGCCCA
GGCTCCAGCACCACTGTCCCAGGACATGAGTTCTTCTGAGGCAGGAAGGT
AGTAGGGCATCAGGCTCCAGAAAGTTCTTAGTTCACACAACACCATGCAA
GTACAGAGCTAAAAACTTCCTGAACGTCTCCGGCTGGAAATCAACAGGCC
CAACAGGTTCCTGGAAAAAAACACAGACCATTAGGATTCTACTACCATTT
CATGGCAGCAAAGGAAATGGGTCACTTCCTCAGAGTCACCAGTGCCTGGC
GAGTCACTGTCATCTCCTGCAACATCTCTCAGTGAACAAGGACACCATGG
AGCCGGTGCTGCATATAGGCAGGGTTCCCAGCACTTGTCTGCCATGTCAT
CTGCTGACACTGCTCTGGCTCCCTACGTCCCTCACTCCAGCCACCATGGA
ATGACAAGAACCCCCAGTCTACTATACTGGGTTGCAGGTTCCTCTCTCCC
TGTCTAAGTCCCAATAAGGGAGTGAGATCTGGCTCTCAAACAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_d23.b1 MSMg01no324_d23.b1 CHROMAT_FILE:
MSMg01no324_d23.b1 PHD_FILE: MSMg01no324_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:31 2005
         (641 letters)



>mm_chr4_106896493_106897532
          Length = 1040

 Score = 1162 bits (601), Expect = 0.0
 Identities = 631/641 (98%), Gaps = 1/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaattcctcaaatatttgcctaccgatggggccctagagggtggccgtatctagaggga 60
           |||||||||||||||  || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 840 ggaattcctcaaatagatgactaccgatggggccctagagggtggcagtatctagaggga 781

                                                                       
Query: 61  ggcagagaatgaagggtttagtgagaagagatggtcaaacaggaagacagaacagtgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggcagagaatgaagggtttagtgagaagagatggtcaaacaggaagacagaacagtgtgc 721

                                                                       
Query: 121 cattatgggaactaaggaaaacaagaatgaccaagaaagcttctgagcagaaaaggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cattatgggaactaaggaaaacaagaatgaccaagaaagcttctgagcagaaaaggcaca 661

                                                                       
Query: 181 ggagacagacacaggcaacttgactggaagtagaaaaggcagtcaggaaaacctaatgtg 240
           |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 660 ggagacagacacgggcaacttgactggaagtagagaaggcagtcaggaaaacctgatgtg 601

                                                                       
Query: 241 tgggggctgattgtcaaaaaagactgaggcatgacccatgctggtatgctatgaggaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgggggctgattgtcaaaaaagactgaggcatgacccatgctggtatgctatgaggaaca 541

                                                                       
Query: 301 agcccaagaagaaaacagtctgtggcctcagagatccagtcacccctgtccttaccttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agcccaagaagaaaacagtctgtggcctcagagatccagtcacccctgtccttaccttgc 481

                                                                       
Query: 361 atgacagtagtggccaggccagctcaaccatcatagctcacaagaggaagccagtgtcca 420
           | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aggacagtagtggccgggccagctcaaccatcatagctcacaagaggaagccagtgtcca 421

                                                                       
Query: 421 actctgcttccagacttgttgaggtggctaaaaactgaccccacaaggaacagccaaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 actctgcttccagacttgttgaggtggctaaaaactgaccccacaaggaacagccaaggc 361

                                                                       
Query: 481 tatgggacagcttgagatgcctcttgggagactatccccaggttgtaaaggaaggctttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatgggacagcttgagatgcctcttgggagactatccccaggttgtaaaggaaggctttc 301

                                                                       
Query: 541 ctgaaaccaagggaacaaataccttttctggatctagactgacctgaaaaaaaatctgaa 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 300 ctgaaaccaagggaacaaataccttttctggatctagactgacctg-aaaaaaatctgaa 242

                                                    
Query: 601 aatctggtagaatcagctttgcagagcctccgctgtcagga 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatctggtagaatcagctttgcagagcctccgctgtcagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space:   649930
Effective search space used:   649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_d23.g1 MSMg01no324_d23.g1 CHROMAT_FILE:
MSMg01no324_d23.g1 PHD_FILE: MSMg01no324_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:31 2005
         (544 letters)



>mm_chr4_106728174_106729117
          Length = 944

 Score =  957 bits (495), Expect = 0.0
 Identities = 531/543 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgtgtgcaaaagcatagctgccccaggacctggtctttaagaggcaagaaggcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgtgtgcaaaagcatagctgccccaggacctggtctttaagaggcaagaaggcatac 260

                                                                       
Query: 61  ggtgtggtctgcatacagcacataccaatgtctcacagacaatctcacaccaatgcaata 120
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtggtctgcatacagcacatactaatatctcacagacaatctcacaccaatgcaata 320

                                                                       
Query: 121 ctaagactttatttccatagagacaccagaccgagggagagtggaaggctcgcccaggct 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ctaagactttatttccatagagacaccagaccgtgggagagtggaaggctcgcccaggct 380

                                                                       
Query: 181 ccagcaccactgtcccaggacatgagttcttctgaggcaggaaggtagtagggcatcagg 240
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 381 ccagcaccaccgtcccaggacatgagctcttctgaggcaggaaggtagtagggcaccagg 440

                                                                       
Query: 241 ctccagaaagttcttagttcacacaacaccatgcaagtacagagctaaaaacttcctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccagaaagttcttagttcacacaacaccatgcaagtacagagctaaaaacttcctgaa 500

                                                                       
Query: 301 cgtctccggctggaaatcaacaggcccaacaggttcctggaaaaaaacacagaccattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtctccggctggaaatcaacaggcccaacaggttcctggaaaaaaacacagaccattag 560

                                                                       
Query: 361 gattctactaccatttcatggcagcaaaggaaatgggtcacttcctcagagtcaccagtg 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gattctactaccatttcatggcagcaaaggaaatggatcacttcctcagagtcaccagtg 620

                                                                       
Query: 421 cctggcgagtcactgtcatctcctgcaacatctctcagtgaacaaggacaccatggagcc 480
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 621 cctggcgagtcactgtcatctcctgcatcatctctcggtgaacaaggacaccaaggagcc 680

                                                                       
Query: 481 ggtgctgcatataggcagggttcccagcacttgtctgccatgtcatctgctgacactgct 540
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 681 ggtgctgcatataggcagggttcccagcacctgtcagccatgtcatctgctgacactgct 740

              
Query: 541 ctg 543
           |||
Sbjct: 741 ctg 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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