Query= MSMg01no324_e07.b1 MSMg01no324_e07.b1 CHROMAT_FILE:
MSMg01no324_e07.b1 PHD_FILE: MSMg01no324_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:32 2005
(262 letters)
>mm_chr4_15649748_15650408
Length = 661
Score = 468 bits (242), Expect = e-136
Identities = 251/254 (98%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 9 gaattcatatgctccttcaaaaccatctgtaactccagtccgagccaatgtgatgctctc 68
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcatatgctgtttcaaaaccatctgtaactccagtccgagccaatgtgatgctctc 268
Query: 69 ttctaacttctcaaggtatgaggcacacacatgatacacatacattcatgaagacgaaac 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttctaacttctcaaggtatgaggcacacacatgatacacatacattcatgaagacgaaac 328
Query: 129 acttgtgcataaaataaacgaatccaaaaaaattagtggaatttcctacttaacagttag 188
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 329 acttgtgcataaaataaacgaatccaaaaaaattagtg-aatttcctacttaacagttag 387
Query: 189 tttttgtaaactgtctgccaaggaattcaactttatattttgtaacttaaaaactaataa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttttgtaaactgtctgccaaggaattcaactttatattttgtaacttaaaaactaataa 447
Query: 249 taaggatatatgtt 262
||||||||||||||
Sbjct: 448 taaggatatatgtt 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 661
Length adjustment: 9
Effective length of query: 253
Effective length of database: 652
Effective search space: 164956
Effective search space used: 164956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no324_e07.g1 MSMg01no324_e07.g1 CHROMAT_FILE:
MSMg01no324_e07.g1 PHD_FILE: MSMg01no324_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:32 2005
(654 letters)
>mm_chr4_15803141_15804194
Length = 1054
Score = 922 bits (477), Expect = 0.0
Identities = 550/589 (93%), Gaps = 30/589 (5%)
Strand = Plus / Minus
Query: 1 acttgaagagggagggtggagagaaccaactccaaaaatgtgtctcttgatgtgccttgg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 573 acttgaagagggagggtggagagaaccaactccaaaaaagtgtctcttgatgtgccttgg 514
Query: 61 catgtgcacat--------atcatacaaaacataataaaaccataaataaaatctaaaaa 112
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 513 catgtgcacatatatatacatcatgcaaaacataataaaaccataaataaagtctaaaaa 454
Query: 113 ctttcagtggttactcatttgcttgagcagtagaatttaaatctattaagcctttaattc 172
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 ctttcagtggttactcatttgcttgagcagtagaatttaaatccattaagcctttaattc 394
Query: 173 aaacagacatatattttagcatcacttccaa-agctgtccttgtaatatctaacaacaaa 231
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 393 aaacagacatatattttagcatcacttccaata-ctgtccttgtaatatctaacaacaaa 335
Query: 232 atcatttatatattttgaacattgattctttgggatgtctgttgacccctcctttggcat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atcatttatatattttgaacattgattctttgggatgtctgttgacccctcctttggcat 275
Query: 292 ctcctttttactaagagataatatttcggcattggtataaattaagtccaccc---cttg 348
||| ||||||||||| |||||||||||||||||||| | | ||||
Sbjct: 274 ctc------------agataatattttggcattggtataaattaagt-ta--ctttcttg 230
Query: 349 tcctctgtcttccctgcctgactcctcagtaggaagatccagttatttactaagcgattt 408
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 229 tcctctgtcttccctgtctgactcctcagtaggaaggtccagttatttactaagcaattt 170
Query: 409 aaagagttaaactaaaaacaattaagttcatgaattaaagtcagctaataacaggttgga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aaagagttaaactaaaaacaattaagttcatgaattaaagtcagctaataacaggttgga 110
Query: 469 agtttgttacattttgattttaatctgattacaagttaatatctgactagaagaaattta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agtttgttacattttgattttaatctgattacaagttaatatctgactagaagaaattta 50
Query: 529 ttacatgttaatatttaaggttgca--tttttttgtaagtacaaatgag 575
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 49 ttacatgttaatatttaaggttgcatttttttttgtaagtacaaatgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
