BAC Information

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BAC

Clone NameMSMg01-324I05
Chromosome4 (Build37)
Map Location 91,812,126 - 91,812,486
singlet/doubletsinglet
Overlap gene1700011H22Rik
Upstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886
Downstream geneLOC68280, LOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I05.T7 (MSMg01no324_i05.b1)MSMg01-324I05.TJ (MSMg01no324_i05.g1)
ACCAG442642AG442643
length739729
length of high quality
(start - end)
365 (48 - 412)279 (79 - 357)
definitionCHROMAT_FILE: MSMg01no324_i05.b1 PHD_FILE: MSMg01no324_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:51 2005CHROMAT_FILE: MSMg01no324_i05.g1 PHD_FILE: MSMg01no324_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGAAATGCCACTTAAGAGTCCCGGAAATGCCCAAGATCTAA
TCTATATTCATGAGCCAAGGAAAACTCTTGCCATGACATTTTCTTATTAT
ATGTTTCTTTGCCAGTTGTAATTGAAGGTCCTGTCCTCGATTGTTGGACC
TGTCTTCGGATGACCACTCGGTGTTTCAAAGGAGACTATTGTCAAGGTGA
CGTGGGTGGGGACAGGTCTCAAGGAACTAGATGTTCCACTACCTTTATTT
TGAGTACTTTTAATAAAGCTTACAGTATTCCCCCAAGCAATGGGGGGAAC
ACCAGGGCCAAGAAGTGGGAGTGAGTAGGTAGGGAGGGAACAGGGCGGGG
GGAGGGTATAGGAGACCCCACCCATAGTATTTGAAATGCAACTGAACAAA
GTACCTTATACAAATTTACAATAATATTGCTTACTGTATTGCTATTTACA
AAAAATACATAAGTCGACCTCCCACAACACGCTGAGTAAAGTCTATATTA
CCATGATTATCTTTAAAGCTAATTCACTGACACAGGTACCGCATTCTCTG
CCCCGCTATGTTCCATTCCCCTGTTTTTATTCACTAGTCTTTACCATTCT
TTTCTCACTTTTTTTTTTCACCTCATTTACTCTATTCCCTTCTTTTTTAA
CAAAACGTAAACACGACTTAGATACATGTATAGATTCTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGACTGGTGCACTCTTTTA
TATATTGAGCCTCCAGCAGCTCTTGGACTACTGGTTCTAGTGCTTGTAAC
TTTCCTTTAGTCACAGGGCATTGTTCTACCTACAAAGGTTTGTCAGTTTG
CCACTTTAGTGGTAAGGCATATTATAATCTACCAAAAGTGGCTCTCCCAT
ATAGAGCTGAAGAGTCAGCCATGGTTATATCATTTATGGACAGCACTCAC
AGTCTGTTAACTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTGGGNAAGAAATTCTCCCCCCTTATAGCCAGTCTCTAAAACTGGAGAG
TTTCTTTTCTTTTCTTTTCCCTAAGTATAGAAAAAAGTTTATTTGGGGCA
TGGGGAGGGGAATTGAAAGAGTAGTAAAGTCCTAAAAAGGAATAAAAAGG
GAGACCGTAAATAACTGGAGGCCAGCCCTGACCCCCTGGAGAGAGGAAGG
AAGGGAATTTGGCAAAAAAAAGGGAGCCCTTTGGCCCCCAAAGCCCAAAA
TAGTTTTGAATGTAAAAACCACTTGGAAAACCTCTAATCTGGTTTTTTCA
CTGTTGCAATAAATTTCCTTCCAAAAAAATTAAGGGCTGGATAATACTAA
ATAGAGCCTTAACTTTTCCATATGACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i05.b1 MSMg01no324_i05.b1 CHROMAT_FILE:
MSMg01no324_i05.b1 PHD_FILE: MSMg01no324_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:51 2005
         (365 letters)



>mm_chr4_91811991_91812755
          Length = 765

 Score =  638 bits (330), Expect = 0.0
 Identities = 354/362 (97%), Gaps = 2/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagaaatgccacttaagagtcccggaaatgcccaagatctaatctatattcat 64
           |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 gaattccaagaaatgtaacttaagagttccggaaatgcccaagatctaatctatattcat 437

                                                                       
Query: 65  gagccaaggaaaactcttgccatgacattttcttattatatgtttctttgccagttgtaa 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 gagccaaggaaaactcttgccatgactttttcttattatatgtttctttgccagttgtaa 377

                                                                       
Query: 125 ttgaaggtcctgtcctcgattgttggacctgtcttcggatgaccactcggtgtttcaaag 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 ttgaaggtcctgtcctcgattgttggaactgtcttcggatgaccactcggtgtttcaaag 317

                                                                       
Query: 185 gagactattgtcaaggtgacgtgggtggggacaggtctcaaggaactagatgttccacta 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 gagactattgtcaaggtgacgtgggtggggacaggtctcaaggaactagatggtccacta 257

                                                                       
Query: 245 cctttattttgagtacttttaataaagcttacagtattccc-ccaagcaatggggggaac 303
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 256 cctttattttgagtacttttaataaagcttacagtattcccacc-agcaatggggggaac 198

                                                                       
Query: 304 accagggccaagaagtgggagtgagtaggtagggagggaacagggcggggggagggtata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 accagggccaagaagtgggagtgagtaggtagggagggaacagggcggggggagggtata 138

             
Query: 364 gg 365
           ||
Sbjct: 137 gg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)