Query= MSMg01no324_i12.b1 MSMg01no324_i12.b1 CHROMAT_FILE:
MSMg01no324_i12.b1 PHD_FILE: MSMg01no324_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:52 2005
(682 letters)
>mm_chr4_109575014_109576095
Length = 1082
Score = 1241 bits (642), Expect = 0.0
Identities = 668/677 (98%), Gaps = 1/677 (0%)
Strand = Plus / Plus
Query: 7 attctctatgtacgctaggtagcctggttcctagagatctgtctatgtctgcctctggag 66
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 206 attctctatgtaggctaggtagcctggttcctagagatctgtctaagtctgcctctgaag 265
Query: 67 tggattaaaagcatgtggcttttctctgtttttttatctactaattttttt-cacaaatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 tggattaaaagcatgtggcttttctctgtttttttatctactaattttttttcacaaatt 325
Query: 126 tgctttgattccagtcgcttcatccaattaactatccttccaggacacaggtatttgcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgctttgattccagtcgcttcatccaattaactatccttccaggacacaggtatttgcag 385
Query: 186 tatagtatgaaaacagagcagtggctgcaggtagaagacatagaagagaccaaaaaaacc 245
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 tatagtatgaaaacagagcagtggctgcaggcagaagacatagaagagaccaaaaaaacc 445
Query: 246 aatttcttaagtttcaaaaggaggttcatagatcacagctaaagaactaggatgaatttg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatttcttaagtttcaaaaggaggttcatagatcacagctaaagaactaggatgaatttg 505
Query: 306 ttttgagcactaaacttatgaatttctcagggaccagttttccatacattcacaatatcc 365
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 506 ttttgagcactaaacttatgattttctcagggaccagttttccatgcattcacaatatcc 565
Query: 366 tcaacactggtaccaataaggatgatacaatccgttagatattaatgatatacagataat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaacactggtaccaataaggatgatacaatccgttagatattaatgatatacagataat 625
Query: 426 tctagtaaaaagattacataattttcatgatgccaggtatatgtaggacattgagataga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctagtaaaaagattacataattttcatgatgccaggtatatgtaggacattgagataga 685
Query: 486 aatagtggtagtggttacatgactgtatgcatgtgtcagaattcacagaactatatacca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatagtggtagtggttacatgactgtatgcatgtgtcagaattcacagaactatatacca 745
Query: 546 tataattcttttattgtatgctcatttgaaaataaaatttttcagaacgaaaatatacag 605
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 746 tataattcttttattgtatgctcatttgaaaataaaatttttcagaaggaaaatatacag 805
Query: 606 ttcatagaatggacttgaaaatccattttaacagaattgtattatcttgtattanaaact 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 806 ttcatagaatggacttgaaaatccattttaacagaattgtattatcttgtattacaaact 865
Query: 666 tattaaaatactagcat 682
|||||||||||||||||
Sbjct: 866 tattaaaatactagcat 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_i12.g1 MSMg01no324_i12.g1 CHROMAT_FILE:
MSMg01no324_i12.g1 PHD_FILE: MSMg01no324_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:52 2005
(650 letters)
>mm_chr4_109595038_109596087
Length = 1050
Score = 640 bits (331), Expect = 0.0
Identities = 367/383 (95%), Gaps = 8/383 (2%)
Strand = Plus / Minus
Query: 268 ctctcatagttatctttcattaatatagtgtccttaaagtttgtttatattgtagtatta 327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1050 ctctcatagttatctttcattaatatagtgtccttaaagtttgtttatattgtagtatca 991
Query: 328 tttctttttataattgaattaattccatttgtgtgtatgtatatgtatgtatctgtatac 387
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 990 tttctttttataactgaattaattccatttgtgtgtgtgtatatgtatgtatttgtatac 931
Query: 388 cacatttgtatgttcacctttctgtttgtggacacttgagttttttccaccttctggata 447
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 930 cacatttgtatgttcacctttctgtttgtggacac--gaattttttccaccttctggata 873
Query: 448 ttgtgaatactactataattacattcttattggacatttatggatttatttaaagatatc 507
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 872 ttgtgaatactactataattac------attggacatttatggatttatttaaagatatc 819
Query: 508 tacctgacctttgctctttttcttatcaaatacatgatttgtaaatattaattacatttt 567
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tacctgacctttgccctttttcttatcaaatacatgatttgtaaatattaattacatttt 759
Query: 568 gtagatctgtcttttcttcatggcatcttttggtacatggaggtattcttaatttttatg 627
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 758 gtagatctgtcttttctccatggcatcttttggtacatggaagtattcttaatttttatg 699
Query: 628 agcccttccttccttccttcttt 650
|||||||||||||||||||||||
Sbjct: 698 agcccttccttccttccttcttt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
