BAC Information

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BAC

Clone NameMSMg01-324K17
Chromosome4 (Build37)
Map Location 117,438,496 - 117,439,003
singlet/doubletsinglet
Overlap genenone
Upstream geneTesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17
Downstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K17.T7 (MSMg01no324_k17.b1)MSMg01-324K17.TJ (MSMg01no324_k17.g1)
ACCAG442759
length725728
length of high quality
(start - end)
---507 (75 - 581)
definitionCHROMAT_FILE: MSMg01no324_k17.b1 PHD_FILE: MSMg01no324_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:02 2005CHROMAT_FILE: MSMg01no324_k17.g1 PHD_FILE: MSMg01no324_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXX
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGACCTGTCTGCTTGCCTTATTTC
TCTCCAAAATAAATCATTTTTTTTAACATTTATTTTTATAGTGTGAGTGC
TTTGCCTACAGGCATGCATGTTCACCTGCATGGTACCCAAGGCAATCAGA
GGAGGGTGTTCAATTTCCTAGAACTGGAGTTACAGAGAATCAGCGCCCCC
ACACCGGGTATGGTTAATACTGTGGGATGCCTAAATTGTACGGTGTGGGC
ATCTGGGCGTCACTTTGCATGGAGGAAGGACAGAGGCGCTCCTCCTTAGC
CCTATGAAAACCTACTGTGTTGGTCTGGAGGGATTATGGTGTCTCTTTTG
TCTACAGAGGCTGCGCACCCTTCCTGTGTTATCAAGCCTTTCTTCTGTTT
CTCCACTGAGATCAGAGAGACTGGCTTGACTGAAGTCTCAGATCGCGGTT
TCCCCAACACTCCTTTCTGTCAAGCAGTTGCTCAAAACTGTAGGTTAGAG
GGTTTAGGTAGAGAAGGGCGGAGTGGGGTAGGGCATAGGCGTTTCCCCCC
TTTTTTTCTTTCCCTTTCCTCCCTTTCCCCCCCCCCTTAATTCCCCTTTG
CCTCCTCCCCCCTTTTTTTCTTTCCCCTTCTTTCCCTAAAACAAAATTTA
TATATCAACTATCCCTCTTCTTATTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k17.g1 MSMg01no324_k17.g1 CHROMAT_FILE:
MSMg01no324_k17.g1 PHD_FILE: MSMg01no324_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
         (507 letters)



>mm_chr4_117438134_117439040
          Length = 907

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacctgtctgcttgccttatttctctccaaaataaatca-ttttttttaacatttat 59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 870 agagacctgtctgcttgccttatttctctccaaaataaatcatttttttttaacatttat 811

                                                                       
Query: 60  ttttatagtgtgagtgctttgcctacaggcatgcatgttcacctgcatggtacccaaggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ttttatagtgtgagtgctttgcctacaggcatgcatgttcacctgcatggtacccaaggc 751

                                                                       
Query: 120 aatcagaggagggtgttcaatttcctagaactggagttacagagaatcagcgcccccaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aatcagaggagggtgttcaatttcctagaactggagttacagagaatcagcgcccccaca 691

                                                                       
Query: 180 ccgggtatggttaatactgtgggatgcctaaattgtacggtgtgggcatctgggcgtcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ccgggtatggttaatactgtgggatgcctaaattgtacggtgtgggcatctgggcgtcac 631

                                                                       
Query: 240 tttgcatggaggaaggacagaggcgctcctccttagccctatgaaaacctactgtgttgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tttgcatggaggaaggacagaggcgctcctccttagccctatgaaaacctactgtgttgg 571

                                                                       
Query: 300 tctggagggattatggtgtctcttttgtctacagaggctgcgcacccttcctgtgttatc 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 570 tctggagggattatggtgtctcttttgtctacagaggctgtgcacccttcctgtgttatc 511

                                                                       
Query: 360 aagcctttcttctgtttctccactgagatcagagagactggcttgactgaagtctcagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagcctttcttctgtttctccactgagatcagagagactggcttgactgaagtctcagat 451

                                                                       
Query: 420 cgcggtttccccaacactcctttctgtcaagcagttgctcaaaactgtaggttagagggt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cgcggtttccccaacactcctttctgtcaagcagttgctcaaaactgtaggttagagggt 391

                                       
Query: 480 ttaggtagagaagggcggagtggggtag 507
            |||||||||||||||||||||||||||
Sbjct: 390 ctaggtagagaagggcggagtggggtag 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)