Query= MSMg01no324_o02.b1 MSMg01no324_o02.b1 CHROMAT_FILE:
MSMg01no324_o02.b1 PHD_FILE: MSMg01no324_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:18 2005
(703 letters)
>mm_chr4_34936375_34937477
Length = 1103
Score = 1313 bits (679), Expect = 0.0
Identities = 695/701 (99%), Gaps = 2/701 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtctcaactccgttacagaatatgaacagccagctatacaggaagagttcaca 64
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 846 gaattctgtctcaagtccgttacagaatatgaacagccagctatacagaaagagttcaca 787
Query: 65 aaccgttcttactgtccagaagacagcagtgaaaatcttcatatgcgtatgtgtttaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaccgttcttactgtccagaagacagcagtgaaaatcttcatatgcgtatgtgtttaatc 727
Query: 125 tcgccagccatgtctgtaactgaagctagtattaatacatccttgtgtatctagatgagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 726 tcgccagccatgtctgtaactgaagctagtattaatacatccttgtgtatctagatgcgg 667
Query: 185 taggtgaagtttaaagcagctaggcacttgtgtacttccagctgccaagactggaaatga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 taggtgaagtttaaagcagctaggcacttgtgtacttccagctgccaagactggaaatga 607
Query: 245 cacttgaaggatcaggtaaccaactatagactttttgccgtgtatattctaagattgtca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacttgaaggatcaggtaaccaactatagactttttgccgtgtatattctaagattgtca 547
Query: 305 ccacgcttcaacatactgtaagcctgtgaagatggcttttagcaaagataattgatctca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccacgcttcaacatactgtaagcctgtgaagatggcttttagcaaagataattgatctca 487
Query: 365 caaccttctcttttcagctaagaatcccccagaatcagtgattttagactatatataggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaccttctcttttcagctaagaatcccccagaatcagtgattttagactatatataggg 427
Query: 425 gaatcctaaaataaagagatcaagcataagacacacaaggagcagcttgactctggtcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatcctaaaataaagagatcaagcataagacacacaaggagcagcttgactctggtcct 367
Query: 485 aacgggagcagtggtgccctgcagaccacaaggactgttctctgtcaaccccagccacac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aacgggagcagtggtgccctgcagaccacaaggactgttctctgtcaaccccagccacac 307
Query: 545 tctgtcgccttctgtggaggctgacattgttgctaagcatcgtccatttgataatctggt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctgtcgccttctgtggaggctgacattgttgctaagcatcgtccatttgataatctggt 247
Query: 605 agctttcattcttcctgctgctgatatgaaaaaaaaatgtattatttacatatatatata 664
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 246 agctttcattcttcctgctgctgaaatgaaaaaaaaatgtattatttacatatatatata 187
Query: 665 --catatatatttacacatatttacataaatatatgtaaat 703
|||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tacatatatatttacacatatttacataaatatatgtaaat 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no324_o02.g1 MSMg01no324_o02.g1 CHROMAT_FILE:
MSMg01no324_o02.g1 PHD_FILE: MSMg01no324_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:18 2005
(245 letters)
>mm_chr4_34767536_34768180
Length = 645
Score = 271 bits (140), Expect = 3e-77
Identities = 163/171 (95%)
Strand = Plus / Plus
Query: 1 cctaacggnatacatgagatggaactgaggaatgaagaccattagcacccatgtatcaca 60
|||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct: 201 cctaacggtatacatgagatggaactgaagaatgaagaccatcagcaaccatgtatcaca 260
Query: 61 ggactgtagttgtctctcctggctgataataatctctctcacaacccatcagatgcaagg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactgtagttgtctctcctggctcataataatctctctcacaacccatcagatgcaagg 320
Query: 121 taagcaaaaggacaggtgttctgtgtgtaagactgatatgtgattttaagg 171
|||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct: 321 taagcaaaaggataggtgttatgtatgtaagactgatatgtgattttaagg 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
